GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002460-TA|BGIBMGA002460-PA|IPR001900|Ribonuclease II and
R
         (390 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   3.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   8.6  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 302 WEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSR 340
           +E+DE+A+V++      I  S    + EE    IDD+ +
Sbjct: 154 YEVDESASVMTNGRIHGIQPSPTLPSKEEVSKKIDDNQK 192


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 39 EDKTEDPENILEEETVLLD 57
          ED+    EN+ EE++ L+D
Sbjct: 28 EDEKRSSENLTEEKSSLID 46


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,420
Number of Sequences: 317
Number of extensions: 3431
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 390
length of database: 114,650
effective HSP length: 58
effective length of query: 332
effective length of database: 96,264
effective search space: 31959648
effective search space used: 31959648
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)