GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002460-TA|BGIBMGA002460-PA|IPR001900|Ribonuclease II and
R
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...   318   9e-88
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...   186   6e-48
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    89   1e-18
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    50   4e-07
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    50   6e-07
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...    29   1.1  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    28   2.0  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    27   3.4  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    27   4.5  
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    27   6.0  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    26   7.9  

>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score =  318 bits (781), Expect = 9e-88
 Identities = 172/394 (43%), Positives = 241/394 (61%), Gaps = 34/394 (8%)

Query: 3   ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPENILEEETVLLDAAKPV 62
           +L+ G   +NRA+ GDIV I+I P+++W+  +    E+  +D E+++       D+A+ +
Sbjct: 292 VLVSGRENLNRAVQGDIVCIQILPQDQWKTEA----EEIADDDEDVVVSTAAEPDSAR-I 346

Query: 63  DNDDEIT-----PTGKVVGIIRRKWRQYCG-----ILMPSKFHGATRHLFTPAEKRIPRV 112
           ++ + IT     PT KVVGI++R WR Y G      +  SK       L TP ++R+P++
Sbjct: 347 NDLELITKRNAHPTAKVVGILKRNWRPYVGHVDNATIAQSKGGSQQTVLLTPMDRRVPKI 406

Query: 113 RIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHAR 172
           R  TRQ+  L  +RI+VA+D W  +SRYP GH VR       K+AE E +LLE+DV H  
Sbjct: 407 RFRTRQAPRLVGRRIVVAIDLWDASSRYPEGHFVRDLGEMETKEAETEALLLEYDVQHRP 466

Query: 173 FSEAVLNCLPP--NDWTIPEEER----QKRVDLRDVCVCSVDPPGCTDIDDALHARRLGS 226
           F +AVL+CLP   ++W +P ++     + R D RD  +CS+DPPGC DIDDALHA  L +
Sbjct: 467 FPKAVLDCLPEEGHNWKVPADKTHPLWKNRKDFRDKLICSIDPPGCQDIDDALHACVLPN 526

Query: 227 SDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPG--NVSVTTVKY 284
            +    YEVGVHIADVTHFVKP+T++D EAASR TTVYLVD+RIDM+P      + +++ 
Sbjct: 527 GN----YEVGVHIADVTHFVKPNTSMDSEAASRGTTVYLVDKRIDMLPMLLGTDLCSLRP 582

Query: 285 YILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEI 344
           Y+       ER AFSC+WEMDENAN++   F KS+I SK A +Y +AQ  IDD   +D +
Sbjct: 583 YV-------ERFAFSCIWEMDENANIIKVHFTKSVIASKEAFSYADAQARIDDQKMQDPL 635

Query: 345 AKSXXXXXXXXXXXXXXXXDSGALLLASPEIRFQ 378
            +                 D GAL LASPE+R Q
Sbjct: 636 TQGMRVLLKLSKILKQKRMDEGALNLASPEVRIQ 669


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score =  186 bits (452), Expect = 6e-48
 Identities = 112/287 (39%), Positives = 159/287 (55%), Gaps = 24/287 (8%)

Query: 73  KVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQSEILASQRIL---- 128
           K+VGI+R        +   SK   ++  +F P +KR+P + I       L+ +  +    
Sbjct: 308 KIVGILRAPGWSLKNVEYVSK--KSSYAIFIPKDKRLPFITIHKNDLSDLSGENWIENIL 365

Query: 129 --------VALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNC 180
                   V +  W   SRYP+G L        D +A    +LLE+ +  + FS+ VLNC
Sbjct: 366 KHHDQLFSVEITRWSIYSRYPMGVLGEKLGNITDVEAYTNALLLENGISSSPFSDEVLNC 425

Query: 181 LPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIA 240
           LPP+DW I  EE +KR DLR+  + ++DP    D+DDA+  R L +     TYEVGVHIA
Sbjct: 426 LPPDDWIISHEEIKKRRDLRNELIITIDPETARDLDDAVSCRALDN----GTYEVGVHIA 481

Query: 241 DVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSC 300
           DVTHFVKPD+ALDKEAASR+TTVYLV + I M+P       +   +  ++   ERLAFS 
Sbjct: 482 DVTHFVKPDSALDKEAASRATTVYLVQKAIPMLP-----PLLCERLCSLNPNVERLAFSV 536

Query: 301 VWEMDENANVLSTK-FHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAK 346
            W++D N   +  + F K++IK+ A + Y EAQ  I+  S  D + K
Sbjct: 537 FWKLDSNGKEIGKRWFGKTVIKTCARLAYSEAQGVIEGKSWDDAVGK 583


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 89.0 bits (211), Expect = 1e-18
 Identities = 73/240 (30%), Positives = 112/240 (46%), Gaps = 23/240 (9%)

Query: 102 FTPAEKRIPRVRIETRQ--------SEILASQRILVALDSWPRNSRYPLGHLVRLFVPTC 153
           F P++KRIP + I + Q        ++    +  L  +  WP  S +P G L        
Sbjct: 503 FKPSDKRIPLIAISSDQVPPTFFTNNDDFKDKVFLAGIKRWPTTSLHPFGTLYESIGTIG 562

Query: 154 DKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCT 213
           D   E + IL +       F E++ +C+      IP EE QKR +LRD     +   G  
Sbjct: 563 DPKVEYKAILHDFSCHTYDFPESLSHCVKRLPTPIPAEELQKRYNLRDKLTFMI---GTR 619

Query: 214 DIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMV 273
           D   ALH    GS DG+ T  +G+H+ADV ++VK D  LD EAA+R + V L+   +  +
Sbjct: 620 DY--ALHIDT-GSIDGVIT--LGIHVADVAYYVKQDMPLDDEAANRVSEVQLLQGSVPFL 674

Query: 274 PGNVSVTTVKYYILQVSCGEERLAFSCVWEMD-ENANVLSTKFHKSIIKSKAAMTYEEAQ 332
           P  VS        + +  G + L  S V ++D ++  VL      S+I   + ++ E AQ
Sbjct: 675 PKKVSEE------ISLIEGHDCLTISIVVQLDLKSGAVLQCSLGPSVIHPSSFISLESAQ 728


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 50.4 bits (115), Expect = 4e-07
 Identities = 64/270 (23%), Positives = 109/270 (40%), Gaps = 42/270 (15%)

Query: 102 FTPAEKRIPRVRIETRQS--------EILASQRILVALDSWPRNSRYPLGHLVRLFVPTC 153
           F P++KR+P + I T Q+        +  A +  L ++  WP  S +P G LV       
Sbjct: 484 FKPSDKRVPLIAIPTEQAPTDFLGNDQAYAQRLFLASIKRWPVTSLHPFGMLVGELGSMD 543

Query: 154 DKDAENEVILLE---HDVPH----ARFSEAVLNCLPPNDWTIP--EEERQKRVDL---RD 201
              A+   +L +   H  P     A  +   LN L  N   +    + R + V L    D
Sbjct: 544 SMSAQVSALLHDTGVHSEPWEGSAATSAVTALNALSDNFLNVAGCADYRSEDVFLFVKND 603

Query: 202 VCVCSV----------DPPGCTD-IDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDT 250
           V   +V          +    TD +  A H R   +S G   Y VG+H+ DV+  ++P +
Sbjct: 604 VSKAAVSEVKQHESNINSSSATDFVSSAFHIRP--TSTG---YHVGIHVTDVSRVIEPGS 658

Query: 251 ALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANV 310
            LD+E   RS  V L  + + + P      T     L +   ++    S + ++     +
Sbjct: 659 PLDRELQRRSIAVNLCQKSVPLFP------TTLGEALSLREDKDCYTMSLLLDVSSTGKI 712

Query: 311 LSTKFHKSIIKSKAAMTYEEAQIAIDDSSR 340
             T    ++I+ + A T +EA   +   +R
Sbjct: 713 RGTWIGWAVIRPRKAYTMKEADELLQTDAR 742



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/18 (55%), Positives = 15/18 (83%)

Query: 12  NRAIDGDIVAIEIFPKEE 29
           NRA++GD+VAIE+   +E
Sbjct: 340 NRALEGDVVAIELLDVDE 357


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 50.0 bits (114), Expect = 6e-07
 Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 195 KRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDK 254
           +RVDLR +   + D     +IDDA+    LG S+      + +H+A+ T  V   + L  
Sbjct: 502 QRVDLRHLKAFAFDSSSTKEIDDAISVEELGMSNSW----LHIHVANPTSTVDIRSPLGT 557

Query: 255 EAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEER-LAFSCVWEMDENANVLST 313
            A     T+Y  ++ + M+P N+   T KY+ L  S   +R L FS   ++ +N ++L  
Sbjct: 558 FAERNFQTIYHPNKIVYMLPLNI---TQKYWSLDSSSTAQRALTFSA--KISKNGDILDY 612

Query: 314 KFHKSIIKSKAAMTYEEAQIAI 335
           K   S I S    T ++   A+
Sbjct: 613 KVRPSFISSVIKYTPQQLDKAL 634


>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 166 HDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALH---AR 222
           ++V   +F E  +   PPN+  IP E+     D     V SVD      +  AL    A 
Sbjct: 178 NEVAREQFCETTIGFNPPNEVDIPREQIAAVFDRPYFSVVSVDDVAGVALGGALKNVVAM 237

Query: 223 RLGSSDGL 230
            +G +DGL
Sbjct: 238 AVGFADGL 245


>SPBC1289.12 |usp109||U1 snRNP-associated protein
          Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 13 RAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPE 46
          R I G+ +++++ P  EW+KPS  +L     DPE
Sbjct: 52 RLISGNPISLDVVP--EWQKPSYYMLFISNIDPE 83


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 207 VDPPGCTDIDDALHARRL-GSSDGLATYEVGVHIADVTHFVKPDTALD-KEAASRSTTVY 264
           VDPP     +      +L G   G  TY++  H+ADV   +K + A+  +   +      
Sbjct: 599 VDPPSVVGHESGWGCVQLDGKIVGWCTYKLAKHVADVLRLMKIEYAVKLRNGTATEPAKV 658

Query: 265 LVDRRIDMVP 274
            +D  I  VP
Sbjct: 659 PLDLEIGYVP 668


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 27  KEEWRKPSNIVLEDKTEDPENILEEETVLLDAAKPVDNDDEITPTGKVVGIIRRKWRQ 84
           + E RK     L+ +  +  N L++E V    A+  +NDD I      +  +   +RQ
Sbjct: 532 RREKRKSKKEFLKAQKNEASNNLKQEIVSKAGAQETENDDLIDEESDALSELEEDYRQ 589


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 11  INRAIDGDIVAIE--IFPKEEWRKPSNIVLEDKTEDPENILEEETVLLDA 58
           I+  +D  I  +E  + P  EW +P+ I  E   +D E   E+  + +DA
Sbjct: 266 ISATVDNTIEHVETTLDPDTEWHEPTRISYEWDGKDAETYTEDIHLSVDA 315


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 104 PAEKRIPRVRIETRQSEILASQRILVALDSWPRNSRYPLGHLVR----LFVPTCDKDAEN 159
           P  K+  + R+   ++       I++  D+  + +  P GH+       F+     + +N
Sbjct: 580 PVTKKQKKYRMVNEEAH--TGPTIIIPSDNNEKVTTLPAGHVPSEEKGKFINLAMHELQN 637

Query: 160 EVILLEHDVPHARFSEAVLNCL 181
           EV +L   V H    EA+ N L
Sbjct: 638 EVSILRSSVNHREVDEAIDNIL 659


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,729,218
Number of Sequences: 5004
Number of extensions: 73144
Number of successful extensions: 180
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 14
length of query: 390
length of database: 2,362,478
effective HSP length: 74
effective length of query: 316
effective length of database: 1,992,182
effective search space: 629529512
effective search space used: 629529512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)