Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002460-TA|BGIBMGA002460-PA|IPR001900|Ribonuclease II and
R
(390 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0207 - 1633177-1633372,1633623-1633688,1633778-1633859,163... 215 4e-56
02_05_0785 - 31730300-31730701,31730785-31730856,31730940-317328... 148 7e-36
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347... 48 2e-05
01_05_0519 - 22897277-22897986,22898126-22898225 31 1.2
01_06_0766 - 31820168-31820509,31821898-31822110,31822330-318224... 29 4.8
09_03_0191 - 13322141-13322458,13322767-13323033,13324836-133250... 29 6.4
05_05_0045 + 21830291-21830343,21830446-21830541,21830620-218306... 29 6.4
04_03_0540 + 16929782-16929834,16929937-16930032,16930111-169301... 29 6.4
03_02_0971 - 12807981-12808094,12808949-12809053,12809236-128092... 29 6.4
01_06_1350 + 36505926-36505978,36506081-36506176,36506255-365063... 29 6.4
01_06_0709 - 31367152-31367532,31367762-31368035,31368474-31370557 29 6.4
>03_01_0207 -
1633177-1633372,1633623-1633688,1633778-1633859,
1633942-1634037,1634413-1634518,1634602-1634661,
1635114-1635234,1635929-1636040,1636118-1636217,
1636328-1636382,1636489-1636595,1636798-1636850,
1636989-1637114,1637909-1638065,1638226-1638421,
1638917-1639073,1639139-1639379,1639475-1639605,
1639704-1639826,1639929-1639984,1640610-1640767,
1640847-1640984,1641070-1641123
Length = 896
Score = 215 bits (526), Expect = 4e-56
Identities = 144/390 (36%), Positives = 206/390 (52%), Gaps = 59/390 (15%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPENILEEETVLLDA---A 59
I++ G +NRA DGDIVA+E+ P+++W + + + +D +D E++ DA A
Sbjct: 262 IVIHGRSNMNRAFDGDIVAVELLPQDQWHESKSFIADDDEDDEEDVHLAPNSADDAPRKA 321
Query: 60 KPVDND-----DEIT--PTGKVVGIIRRKWRQYCGIL----MPSKFHGATRHLFTPAEKR 108
P + D ++ P G+VVGII+R W YCG L MP+ G LF ++R
Sbjct: 322 NPTQSTAASSADSVSSRPVGRVVGIIKRNWNSYCGSLEPMPMPAGSGGVAHALFVSKDRR 381
Query: 109 IPRVRIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDV 168
IP++RI+TRQ L +RI+VA+DSW SRYP GH V +L+E+D+
Sbjct: 382 IPKIRIQTRQLGNLLDKRIIVAVDSWDVLSRYPSGHYV---------------VLIENDI 426
Query: 169 PHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSD 228
FS VL CLPP WT+ E DL + + D H R + S D
Sbjct: 427 NTRPFSTQVLACLPPLPWTLSPE------DLAN-----------PNRQDLRHVR-VFSVD 468
Query: 229 GLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQ 288
IADVT+FV P T LD+EA+ R T+VYLV +RIDM+P ++ +
Sbjct: 469 P-------PDIADVTNFVHPGTPLDEEASQRGTSVYLVGQRIDMLPKPLTED-----VCS 516
Query: 289 VSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSX 348
+ ERLAFS +WEM +A+++ST++ KS+IKS AAM+Y EAQ +DDS D +
Sbjct: 517 LRADVERLAFSVIWEMTPHADIISTRYTKSVIKSCAAMSYVEAQARMDDSRLVDPLTVDL 576
Query: 349 XXXXXXXXXXXXXXXDSGALLLASPEIRFQ 378
+ GAL LAS E++F+
Sbjct: 577 RNLNSLAKIMRHRRCERGALTLASAEVKFE 606
>02_05_0785 -
31730300-31730701,31730785-31730856,31730940-31732864,
31733000-31733150,31733944-31734009,31734247-31734645
Length = 1004
Score = 148 bits (359), Expect = 7e-36
Identities = 79/225 (35%), Positives = 125/225 (55%), Gaps = 9/225 (4%)
Query: 123 ASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLP 182
A + + + W S YP H+++L + IL E+ + A FS + CLP
Sbjct: 327 AKELVAARISDWNEESLYPCAHVIQLLGKGGQVKTHMDAILFENAISDAEFSPESMECLP 386
Query: 183 PNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADV 242
W IP+EE + R DLR+V ++DPP TD+DDA+ L S G+ +GVHIADV
Sbjct: 387 DICWKIPQEELEVRKDLRNVLTFTIDPPTATDLDDAISIEML--SGGIV--RIGVHIADV 442
Query: 243 THFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVW 302
++FV P+TALD EA RST+VY + R+I M+P +S ++ ++ G +RL FS +W
Sbjct: 443 SYFVHPETALDAEAQIRSTSVYTLRRKISMLPLRLSED-----LVSLNPGVDRLTFSIIW 497
Query: 303 EMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKS 347
++D + N+++ +++I S ++Y+ Q I K + A S
Sbjct: 498 DIDPHGNIINRWIGRTVISSCCKLSYDLVQDLICSDGTKFKSASS 542
>01_06_1303 -
36132588-36132710,36133879-36134103,36134318-36134713,
36135352-36135547,36135591-36135740,36135818-36135924,
36135987-36136094,36136354-36136435,36136436-36136536,
36136778-36136996,36137455-36137583,36137665-36137742,
36137816-36137929,36138071-36138230,36139224-36139441
Length = 801
Score = 47.6 bits (108), Expect = 2e-05
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query: 215 IDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVP 274
+DDAL A RL DG +V +H+AD T V+P + +D+EA R T+++L M P
Sbjct: 404 LDDALSAARL--PDG--RIKVWIHVADPTSLVQPRSIIDREAMHRGTSIFLPTATFPMFP 459
Query: 275 GNVSVTTVKYYILQVSCGEERLAFSCVWEMD-----EN-----ANVLSTKFHKSIIKSKA 324
+++ + LQ G + + S + + D EN ++ SIIK
Sbjct: 460 ERLAMNAMS---LQQGRGCKSVTVSVILQPDGSKIVENYICVVHSIAEYSIENSIIKPTY 516
Query: 325 AMTYEEA 331
+TYE A
Sbjct: 517 MLTYESA 523
>01_05_0519 - 22897277-22897986,22898126-22898225
Length = 269
Score = 31.5 bits (68), Expect = 1.2
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 151 PTCDKDAEN---EVILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSV 207
PTC+ DA E +L VP + A LPP EE+ K+ D DV
Sbjct: 69 PTCNLDAITGRLEASVLVLTVPKKPATTAAAAALPPKA-NQEEEKETKKADEHDVAGKPP 127
Query: 208 DPPGCTDIDDALHARRLGSSD 228
PP TD D + +L + +
Sbjct: 128 PPPPKTDSDQSERRTQLSARE 148
>01_06_0766 -
31820168-31820509,31821898-31822110,31822330-31822473,
31822759-31822797,31822834-31822932,31823024-31823113
Length = 308
Score = 29.5 bits (63), Expect = 4.8
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 13 RAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPENILEEETVLLDAA 59
R I G + ++++PK+E +P D+ E+ EN ++ ++ L +AA
Sbjct: 243 RRIKGKRIRVKVYPKDEIEEPMRKAGTDEVEEEEN-MDVDSELEEAA 288
>09_03_0191 -
13322141-13322458,13322767-13323033,13324836-13325048,
13325153-13325349,13325432-13325636
Length = 399
Score = 29.1 bits (62), Expect = 6.4
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 107 KRIPRVRIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEH 166
K I R+ IE++ + + ++++L+ R + +G L LF K + E + +
Sbjct: 195 KLISRLNIESKIRTLTDKEELVLSLE---RQYQEDVGVLAALFFNYV-KLSPGEALHIGA 250
Query: 167 DVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVC 203
+ PHA S + C+ +D + K D++ +C
Sbjct: 251 NEPHAYLSGECIECMATSDNVVRAGLTPKYKDIQTLC 287
>05_05_0045 +
21830291-21830343,21830446-21830541,21830620-21830694,
21831329-21831403,21831497-21831719,21831813-21832056,
21832621-21832769,21832913-21832944,21832991-21833078,
21833157-21833438,21833542-21834243
Length = 672
Score = 29.1 bits (62), Expect = 6.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 288 QVSCGEERLAFSCVWEMDENANVLSTKFHKSIIK 321
QVSC ER FSCV +M E+ +L + + +++
Sbjct: 410 QVSCDLEREEFSCVCKMFEHKGILCSHILRVLVQ 443
>04_03_0540 +
16929782-16929834,16929937-16930032,16930111-16930185,
16930819-16930893,16930987-16931209,16931303-16931546,
16932111-16932568,16932647-16932928,16933032-16933733
Length = 735
Score = 29.1 bits (62), Expect = 6.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 288 QVSCGEERLAFSCVWEMDENANVLSTKFHKSIIK 321
QVSC ER FSCV +M E+ +L + + +++
Sbjct: 473 QVSCDLEREEFSCVCKMFEHKGILCSHILRVLVQ 506
>03_02_0971 -
12807981-12808094,12808949-12809053,12809236-12809295,
12809399-12809537,12809648-12809832,12809926-12810009,
12810093-12810215,12810617-12810796,12811017-12811092,
12811178-12811277,12811355-12811430,12812155-12812244,
12812342-12812449,12813583-12813651,12813751-12813921,
12814002-12814072,12814263-12814360,12814659-12814719,
12814935-12814971,12815217-12815308,12815428-12815549,
12816281-12816414
Length = 764
Score = 29.1 bits (62), Expect = 6.4
Identities = 11/48 (22%), Positives = 27/48 (56%)
Query: 254 KEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCV 301
K+ RS ++DR ++++ GN +++ ++ ++L++ L CV
Sbjct: 321 KDEIERSKWNQMLDRDVEILKGNANISKIRSFLLKMGLESSDLETVCV 368
>01_06_1350 +
36505926-36505978,36506081-36506176,36506255-36506329,
36506964-36507038,36507132-36507348,36507442-36507685,
36508250-36508707,36508786-36509067,36509171-36509872
Length = 733
Score = 29.1 bits (62), Expect = 6.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 288 QVSCGEERLAFSCVWEMDENANVLSTKFHKSIIK 321
QVSC ER FSCV +M E+ +L + + +++
Sbjct: 471 QVSCDLEREEFSCVCKMFEHKGILCSHILRVLVQ 504
>01_06_0709 - 31367152-31367532,31367762-31368035,31368474-31370557
Length = 912
Score = 29.1 bits (62), Expect = 6.4
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 38 LEDKTE-DPENILEEE-TVLLDAAKPVDNDDEITPTGKVVG 76
L D TE +PE L +E L + VD DDE TP+ K++G
Sbjct: 871 LADATEPEPETDLTDEFDELAVSVSSVDIDDEQTPSDKLIG 911
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.136 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,161,485
Number of Sequences: 37544
Number of extensions: 478824
Number of successful extensions: 1070
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1051
Number of HSP's gapped (non-prelim): 14
length of query: 390
length of database: 14,793,348
effective HSP length: 83
effective length of query: 307
effective length of database: 11,677,196
effective search space: 3584899172
effective search space used: 3584899172
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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