GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002460-TA|BGIBMGA002460-PA|IPR001900|Ribonuclease II and
R
         (390 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052150-1|AAK93574.1|  982|Drosophila melanogaster SD10981p pro...   438   e-123
AE014297-3526|AAF56281.1|  982|Drosophila melanogaster CG6413-PA...   437   e-122
AJ276897-1|CAC35051.1|  983|Drosophila melanogaster putative exo...   418   e-117
BT015237-1|AAT94466.1| 1044|Drosophila melanogaster RE03681p pro...    99   9e-21
AY058669-1|AAL13898.1| 1032|Drosophila melanogaster LD37985p pro...    99   9e-21
AE014296-44|AAN11426.1| 1032|Drosophila melanogaster CG16940-PB,...    99   9e-21
AE014296-43|AAF47351.2| 1032|Drosophila melanogaster CG16940-PA,...    99   9e-21
AE014296-42|AAN11425.1| 1044|Drosophila melanogaster CG16940-PC,...    99   9e-21

>AY052150-1|AAK93574.1|  982|Drosophila melanogaster SD10981p
           protein.
          Length = 982

 Score =  438 bits (1080), Expect = e-123
 Identities = 216/381 (56%), Positives = 270/381 (70%), Gaps = 14/381 (3%)

Query: 3   ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKT----EDP-ENILEEETVLLD 57
           IL+QG   +NRA+DGD+VA+E+ P+ EW  PS IVLE+K     E P E   ++E  +L+
Sbjct: 276 ILIQGRESLNRAVDGDLVAVELLPEAEWSAPSEIVLEEKNVYADEVPSEERAKDENEMLN 335

Query: 58  AAKPVDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETR 117
             +      E TPTG++VGI+RRKWRQYCGIL PS      RH+F PA+++IPR+RIETR
Sbjct: 336 QVRAAALSAERTPTGRIVGIVRRKWRQYCGILQPSLIEDTNRHIFVPADRKIPRIRIETR 395

Query: 118 QSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAV 177
           Q+ +L +QRI+V +D+WPRNSRYP GH VR   P  D   ENEVILLEHDVPH +FS+ V
Sbjct: 396 QAAMLQNQRIIVTIDTWPRNSRYPHGHFVRSLGPLGDMATENEVILLEHDVPHCKFSDEV 455

Query: 178 LNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGV 237
           L+ LP   WTI +E+  KRVDLRD+ +CSVDPPGCTDIDDALH R L + +     EVGV
Sbjct: 456 LSFLPKMPWTITDEDYSKRVDLRDLYICSVDPPGCTDIDDALHCRELPNGN----LEVGV 511

Query: 238 HIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLA 297
           HIADV+HF++P  ALD EAA+R TTVYLV +RIDMVP  +S       +  +  G ER A
Sbjct: 512 HIADVSHFIRPGNALDMEAAARGTTVYLVGKRIDMVPELLSSN-----LCSLVGGVERFA 566

Query: 298 FSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXXX 357
           FSCVWE+D  ANVLS +FHKS+IKSK AMTYEEAQ  IDD+++++EIAKS          
Sbjct: 567 FSCVWEVDNEANVLSKRFHKSVIKSKRAMTYEEAQNIIDDATQQNEIAKSLRNLNRLAKI 626

Query: 358 XXXXXXDSGALLLASPEIRFQ 378
                 D+GAL+LASPEIRFQ
Sbjct: 627 LKKRRMDNGALVLASPEIRFQ 647


>AE014297-3526|AAF56281.1|  982|Drosophila melanogaster CG6413-PA
           protein.
          Length = 982

 Score =  437 bits (1077), Expect = e-122
 Identities = 215/381 (56%), Positives = 270/381 (70%), Gaps = 14/381 (3%)

Query: 3   ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKT----EDP-ENILEEETVLLD 57
           IL+QG   +NRA+DGD+VA+E+ P+ EW  PS IVLE+K     E P E   ++E  +L+
Sbjct: 276 ILIQGRESLNRAVDGDLVAVELLPEAEWSAPSEIVLEEKNVYADEVPSEERAKDENEMLN 335

Query: 58  AAKPVDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETR 117
             +      E TPTG++VGI+RRKWRQYCGIL PS      RH+F PA+++IPR+RIETR
Sbjct: 336 QVRAAALSAERTPTGRIVGIVRRKWRQYCGILQPSLIEDTNRHIFVPADRKIPRIRIETR 395

Query: 118 QSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAV 177
           Q+ +L +QRI+V +D+WPRNSRYP GH VR   P  D   ENEVILLEHDVPH +FS+ V
Sbjct: 396 QAAMLQNQRIIVTIDTWPRNSRYPHGHFVRSLGPLGDMATENEVILLEHDVPHCKFSDEV 455

Query: 178 LNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGV 237
           L+ LP   WTI +E+  KRVDLRD+ +CSVDPPGCTDIDDALH + L + +     EVGV
Sbjct: 456 LSFLPKMPWTITDEDYSKRVDLRDLYICSVDPPGCTDIDDALHCKELPNGN----LEVGV 511

Query: 238 HIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLA 297
           HIADV+HF++P  ALD EAA+R TTVYLV +RIDMVP  +S       +  +  G ER A
Sbjct: 512 HIADVSHFIRPGNALDMEAAARGTTVYLVGKRIDMVPELLSSN-----LCSLVGGVERFA 566

Query: 298 FSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXXX 357
           FSCVWE+D  ANVLS +FHKS+IKSK AMTYEEAQ  IDD+++++EIAKS          
Sbjct: 567 FSCVWEVDNEANVLSKRFHKSVIKSKRAMTYEEAQNIIDDATQQNEIAKSLRNLNRLAKI 626

Query: 358 XXXXXXDSGALLLASPEIRFQ 378
                 D+GAL+LASPEIRFQ
Sbjct: 627 LKKRRMDNGALVLASPEIRFQ 647


>AJ276897-1|CAC35051.1|  983|Drosophila melanogaster putative
           exoribonuclease DIS3 protein.
          Length = 983

 Score =  418 bits (1029), Expect = e-117
 Identities = 209/382 (54%), Positives = 263/382 (68%), Gaps = 15/382 (3%)

Query: 3   ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKT----EDP-ENILEEETVLLD 57
           IL+QG   +NRA+DGD+VA+E+ P+ EW  PS IVLE+K     E P E   ++E  +L+
Sbjct: 276 ILIQGRESLNRAVDGDLVAVELLPEAEWSAPSEIVLEEKNVYADEVPSEERAKDENEMLN 335

Query: 58  AAKPVDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETR 117
             +      E TPTG++VGI+RRKWRQYCGIL PS      RH+F PA+++IPR+RIETR
Sbjct: 336 QVRAAALSAERTPTGRIVGIVRRKWRQYCGILQPSLIEDTNRHIFVPADRKIPRIRIETR 395

Query: 118 QSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAV 177
           Q+ +L +QRI+V +D+WPRNSRYP GH VR   P  D   ENEVILLEHDVPH +FS+ V
Sbjct: 396 QAAMLQNQRIIVTIDTWPRNSRYPHGHFVRSLGPLGDMATENEVILLEHDVPHCKFSDEV 455

Query: 178 LNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGV 237
           L+ LP   WTI +E+  KRVDLRD+ +CSVDPPGCTDIDDALH R L + +     EVGV
Sbjct: 456 LSFLPKMPWTITDEDYSKRVDLRDLYICSVDPPGCTDIDDALHCRELPNGN----LEVGV 511

Query: 238 HIADVTHFVKPDTALDKEAAS-RSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERL 296
           HIADV+HF++P        +    TTVYLV +RIDMVP  +S       +  +  G ER 
Sbjct: 512 HIADVSHFIRPGKRTGHGGSGPGETTVYLVGKRIDMVPELLSSN-----LCSLVGGVERF 566

Query: 297 AFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXX 356
           AFSCVWE+D  ANVLS +FHKS+IKSK AMTYEEAQ  IDD+++++EIAKS         
Sbjct: 567 AFSCVWEVDNEANVLSKRFHKSVIKSKRAMTYEEAQNIIDDATQQNEIAKSLRNLNRLAK 626

Query: 357 XXXXXXXDSGALLLASPEIRFQ 378
                  D+GAL+LASPEIRFQ
Sbjct: 627 ILKKRRMDNGALVLASPEIRFQ 648


>BT015237-1|AAT94466.1| 1044|Drosophila melanogaster RE03681p
           protein.
          Length = 1044

 Score = 99.1 bits (236), Expect = 9e-21
 Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 12/156 (7%)

Query: 188 IPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVK 247
           I +E+ ++R DLR +C+ ++DP    D+DDA+   +LG ++    YE+GVHI+DV+HF+ 
Sbjct: 552 ISQEDLRQRKDLRKMCIFTIDPMTARDLDDAVSIEKLGDNE----YEIGVHISDVSHFLI 607

Query: 248 PDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDEN 307
            D  LD     RST++YL +  I M+P ++ +         +  G+++ AFS  W M+  
Sbjct: 608 EDNELDNIVKERSTSIYLANEVIHMLPQSLCMR------CSLLPGQDKFAFSVFWRMNGK 661

Query: 308 ANVLSTK--FHKSIIKSKAAMTYEEAQIAIDDSSRK 341
             +L  K  F +++I S +   YE AQ  ID+ + +
Sbjct: 662 GVMLQKKPEFCRTVINSCSQFAYEHAQKIIDNPNER 697


>AY058669-1|AAL13898.1| 1032|Drosophila melanogaster LD37985p
           protein.
          Length = 1032

 Score = 99.1 bits (236), Expect = 9e-21
 Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 12/156 (7%)

Query: 188 IPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVK 247
           I +E+ ++R DLR +C+ ++DP    D+DDA+   +LG ++    YE+GVHI+DV+HF+ 
Sbjct: 540 ISQEDLRQRKDLRKMCIFTIDPMTARDLDDAVSIEKLGDNE----YEIGVHISDVSHFLI 595

Query: 248 PDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDEN 307
            D  LD     RST++YL +  I M+P ++ +         +  G+++ AFS  W M+  
Sbjct: 596 EDNELDNIVKERSTSIYLANEVIHMLPQSLCMR------CSLLPGQDKFAFSVFWRMNGK 649

Query: 308 ANVLSTK--FHKSIIKSKAAMTYEEAQIAIDDSSRK 341
             +L  K  F +++I S +   YE AQ  ID+ + +
Sbjct: 650 GVMLQKKPEFCRTVINSCSQFAYEHAQKIIDNPNER 685


>AE014296-44|AAN11426.1| 1032|Drosophila melanogaster CG16940-PB,
           isoform B protein.
          Length = 1032

 Score = 99.1 bits (236), Expect = 9e-21
 Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 12/156 (7%)

Query: 188 IPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVK 247
           I +E+ ++R DLR +C+ ++DP    D+DDA+   +LG ++    YE+GVHI+DV+HF+ 
Sbjct: 540 ISQEDLRQRKDLRKMCIFTIDPMTARDLDDAVSIEKLGDNE----YEIGVHISDVSHFLI 595

Query: 248 PDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDEN 307
            D  LD     RST++YL +  I M+P ++ +         +  G+++ AFS  W M+  
Sbjct: 596 EDNELDNIVKERSTSIYLANEVIHMLPQSLCMR------CSLLPGQDKFAFSVFWRMNGK 649

Query: 308 ANVLSTK--FHKSIIKSKAAMTYEEAQIAIDDSSRK 341
             +L  K  F +++I S +   YE AQ  ID+ + +
Sbjct: 650 GVMLQKKPEFCRTVINSCSQFAYEHAQKIIDNPNER 685


>AE014296-43|AAF47351.2| 1032|Drosophila melanogaster CG16940-PA,
           isoform A protein.
          Length = 1032

 Score = 99.1 bits (236), Expect = 9e-21
 Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 12/156 (7%)

Query: 188 IPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVK 247
           I +E+ ++R DLR +C+ ++DP    D+DDA+   +LG ++    YE+GVHI+DV+HF+ 
Sbjct: 540 ISQEDLRQRKDLRKMCIFTIDPMTARDLDDAVSIEKLGDNE----YEIGVHISDVSHFLI 595

Query: 248 PDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDEN 307
            D  LD     RST++YL +  I M+P ++ +         +  G+++ AFS  W M+  
Sbjct: 596 EDNELDNIVKERSTSIYLANEVIHMLPQSLCMR------CSLLPGQDKFAFSVFWRMNGK 649

Query: 308 ANVLSTK--FHKSIIKSKAAMTYEEAQIAIDDSSRK 341
             +L  K  F +++I S +   YE AQ  ID+ + +
Sbjct: 650 GVMLQKKPEFCRTVINSCSQFAYEHAQKIIDNPNER 685


>AE014296-42|AAN11425.1| 1044|Drosophila melanogaster CG16940-PC,
           isoform C protein.
          Length = 1044

 Score = 99.1 bits (236), Expect = 9e-21
 Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 12/156 (7%)

Query: 188 IPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVK 247
           I +E+ ++R DLR +C+ ++DP    D+DDA+   +LG ++    YE+GVHI+DV+HF+ 
Sbjct: 552 ISQEDLRQRKDLRKMCIFTIDPMTARDLDDAVSIEKLGDNE----YEIGVHISDVSHFLI 607

Query: 248 PDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDEN 307
            D  LD     RST++YL +  I M+P ++ +         +  G+++ AFS  W M+  
Sbjct: 608 EDNELDNIVKERSTSIYLANEVIHMLPQSLCMR------CSLLPGQDKFAFSVFWRMNGK 661

Query: 308 ANVLSTK--FHKSIIKSKAAMTYEEAQIAIDDSSRK 341
             +L  K  F +++I S +   YE AQ  ID+ + +
Sbjct: 662 GVMLQKKPEFCRTVINSCSQFAYEHAQKIIDNPNER 697


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,378,531
Number of Sequences: 52641
Number of extensions: 791319
Number of successful extensions: 1765
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1732
Number of HSP's gapped (non-prelim): 8
length of query: 390
length of database: 24,830,863
effective HSP length: 86
effective length of query: 304
effective length of database: 20,303,737
effective search space: 6172336048
effective search space used: 6172336048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)