Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002460-TA|BGIBMGA002460-PA|IPR001900|Ribonuclease II and
R
(390 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70718-6|CAA94677.1| 1029|Caenorhabditis elegans Hypothetical pr... 368 e-102
U23514-1|AAC46543.1| 817|Caenorhabditis elegans Hypothetical pr... 147 1e-35
U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved olig... 30 3.2
Z81586-12|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical p... 29 4.3
AF067943-1|AAC17662.2| 322|Caenorhabditis elegans Serpentine re... 29 4.3
AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical ... 29 4.3
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z79604-6|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein. 29 5.6
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein... 29 5.6
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein... 29 5.6
>Z70718-6|CAA94677.1| 1029|Caenorhabditis elegans Hypothetical
protein C04G2.6 protein.
Length = 1029
Score = 368 bits (906), Expect = e-102
Identities = 190/376 (50%), Positives = 246/376 (65%), Gaps = 19/376 (5%)
Query: 12 NRAIDGDIVAIEIFPKEEWRKPSN-IVLED-----KT-EDPENILEEETVLLDAAKPVDN 64
NRA++GD VA+++ P+++W P I L D KT +D N EE D K +
Sbjct: 285 NRAVNGDTVAVQLLPEDQWTAPEKKIRLRDVEEYVKTADDMGNEDEENDDENDEPKAKKS 344
Query: 65 DDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQSEILAS 124
T KVVGII+R WR+YCG+L+PS GA RHLF PAE+ IPR+RIET Q+E L+
Sbjct: 345 KKMTVSTAKVVGIIKRNWREYCGMLLPSTVKGARRHLFCPAERLIPRIRIETEQAETLSQ 404
Query: 125 QRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPN 184
QRI+VA+D WPR+S+YPLGH VR ++ ENEV+LLEHD+PHA FSE+VL+CLP
Sbjct: 405 QRIVVAIDHWPRDSKYPLGHYVRSIGEMGSRETENEVLLLEHDIPHAPFSESVLDCLPRE 464
Query: 185 DWTIPEEERQ---KRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIAD 241
+W E + RVDLRD+ +CSVDP GCTDIDDALH +++G +EVGVHIAD
Sbjct: 465 EWEPDLTENRGPLPRVDLRDLTICSVDPLGCTDIDDALHCKQIGED----LFEVGVHIAD 520
Query: 242 VTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCV 301
VTHFV+P TA+D EAA R TTVYL DRRIDM+P +S + + EER AFSC+
Sbjct: 521 VTHFVRPGTAIDDEAALRGTTVYLCDRRIDMLPCLLSSN-----LCSLRGEEERYAFSCI 575
Query: 302 WEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXXXXXXX 361
W M +A++ S K+HKS+IKSKAA+TYE+AQ IDD ++++A
Sbjct: 576 WTMTSSADIQSVKYHKSLIKSKAALTYEKAQEIIDDPKEQNDVALGLRGLMKLSKVLNAR 635
Query: 362 XXDSGALLLASPEIRF 377
+GAL LAS E+RF
Sbjct: 636 RTGNGALTLASSEVRF 651
>U23514-1|AAC46543.1| 817|Caenorhabditis elegans Hypothetical
protein F48E8.6 protein.
Length = 817
Score = 147 bits (356), Expect = 1e-35
Identities = 110/361 (30%), Positives = 169/361 (46%), Gaps = 37/361 (10%)
Query: 12 NRAIDGDIVAIEIFPKEEW-------------RKPSNIVLEDKTEDPENILEEETVLLDA 58
NRA+ GD+VA++I PKE+W K + + N E+ + +
Sbjct: 88 NRAMQGDVVAVKIKPKEDWLVNYVEYVKWWAEHKKGDRNSGKTDNNSPNKTEKRCLRNEI 147
Query: 59 AKPVDNDDEITPT-----GKVVGIIRRK-WRQYCGILMPSKFHGATRHLFTPAEKRIPRV 112
DE+ + G +V I+ +K +R G L LF + R+PR+
Sbjct: 148 QDNGVTSDEVPDSCLITIGAIVHILEKKHFRVAAGKLQLMPNSANPNVLFVATDSRVPRI 207
Query: 113 RIETRQ--SEILAS----QRILVA--LDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILL 164
I E + +R L + W S Y G LV+L + + D E E I+
Sbjct: 208 LIPKSDVDKEFFSRPKDFERFLYTAKITDWRAESVYADGRLVKLLGMSGEIDTETERIVY 267
Query: 165 EHDVPHARFSEAVLNCLP---PNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHA 221
EH + H FS+ L LP +W +P+ E + R D R V ++DP D+DDALHA
Sbjct: 268 EHQIDHREFSDECLESLPITTAENWKVPDAEFEYRRDFRSDIVFTIDPKTARDLDDALHA 327
Query: 222 RRLGSSDGLAT--YEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSV 279
+ + DG T E+GVHIADVT F+K T LDK A+ R + YL I M+P
Sbjct: 328 KHIDDCDGKGTPGLEIGVHIADVTFFLKEGTELDKWASERGNSTYLSQTVIPMLP----- 382
Query: 280 TTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSS 339
+ + ++ G +RL+FS V++M A + F +S+I+S+ + YE AQ I++
Sbjct: 383 RILCEQLCSLNPGVDRLSFSTVFKMSYEAELYDVWFGRSVIRSRVKLAYEHAQDFIENPE 442
Query: 340 R 340
+
Sbjct: 443 K 443
>U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved
oligomeric golgi (cog)component protein 5 protein.
Length = 580
Score = 29.9 bits (64), Expect = 3.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 39 EDKTEDPENILEEETVLLDAAKPVDNDDEITPTGKVVGIIRRK 81
+D++ D E+ EE+ V ++ K D DD + KV + RR+
Sbjct: 240 DDESMDAEDAKEEKVVQIEKEKKEDKDDGVKKEEKVREVSRRR 282
>Z81586-12|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical
protein T05F1.6 protein.
Length = 1165
Score = 29.5 bits (63), Expect = 4.3
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 8/50 (16%)
Query: 28 EEWRKPSNIVLEDKTEDPENILEEETVL---LDAAKPVD--NDDEITPTG 72
+E +P N ED TE+PEN +E E+ + D+ +P++ NDD+ + G
Sbjct: 210 DEKEEPEN---EDDTEEPENEVEVESPVKEQADSGEPIENVNDDKASEPG 256
>AF067943-1|AAC17662.2| 322|Caenorhabditis elegans Serpentine
receptor, class x protein93 protein.
Length = 322
Score = 29.5 bits (63), Expect = 4.3
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 34 SNIVLEDKTEDPENILEE-ETVLLDAAKPVDNDDEITPTGKVVG-IIRRKWRQYCGILMP 91
S + +E K +NIL +T+LLD+ +D IT T ++ RR W +CG +
Sbjct: 214 SQVAVEAKKRMRKNILNFIQTILLDSLYLID----ITFTFELSSWSTRRVWTYFCGTFIW 269
Query: 92 SKFHGATRHLFTPAEKRIPRVRIETRQSEIL 122
H + +++ +R +TR +L
Sbjct: 270 ECLHSLDGFIMIIFNEKLTFLRSKTRNKVVL 300
>AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical
protein Y37B11A.2 protein.
Length = 1133
Score = 29.5 bits (63), Expect = 4.3
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 27 KEEWRKPSNIVLEDKTEDPENILEEETVLLDAAKPVDNDD 66
KEE R+ + ED DP+N E T+ D+ KPV+ D+
Sbjct: 190 KEEDREEA---AEDDDNDPKNQEAEMTMFADSQKPVERDE 226
>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical protein
ZK662.4 protein.
Length = 1440
Score = 29.1 bits (62), Expect = 5.6
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 18 DIVAIEIFPKEEWRKPSNIVLE-DKTEDPENILEEETVLLDAAKPVDNDD 66
D+ EI PK +R+P VLE D+ + ++E+E L KP +N++
Sbjct: 1084 DVDEQEIIPKL-FRQPRKQVLEADQHDGTVKVIEQEDFKLPTVKPSENEE 1132
>Z79604-6|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical protein
ZK662.4 protein.
Length = 1440
Score = 29.1 bits (62), Expect = 5.6
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 18 DIVAIEIFPKEEWRKPSNIVLE-DKTEDPENILEEETVLLDAAKPVDNDD 66
D+ EI PK +R+P VLE D+ + ++E+E L KP +N++
Sbjct: 1084 DVDEQEIIPKL-FRQPRKQVLEADQHDGTVKVIEQEDFKLPTVKPSENEE 1132
>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
Length = 1440
Score = 29.1 bits (62), Expect = 5.6
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 18 DIVAIEIFPKEEWRKPSNIVLE-DKTEDPENILEEETVLLDAAKPVDNDD 66
D+ EI PK +R+P VLE D+ + ++E+E L KP +N++
Sbjct: 1084 DVDEQEIIPKL-FRQPRKQVLEADQHDGTVKVIEQEDFKLPTVKPSENEE 1132
>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 29.1 bits (62), Expect = 5.6
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 18 DIVAIEIFPKEEWRKPSNIVLE-DKTEDPENILEEETVLLDAAKPVDNDD 66
D+ EI PK +R+P VLE D+ + ++E+E L KP +N++
Sbjct: 1084 DVDEQEIIPKL-FRQPRKQVLEADQHDGTVKVIEQEDFKLPTVKPSENEE 1132
>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 29.1 bits (62), Expect = 5.6
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 18 DIVAIEIFPKEEWRKPSNIVLE-DKTEDPENILEEETVLLDAAKPVDNDD 66
D+ EI PK +R+P VLE D+ + ++E+E L KP +N++
Sbjct: 1084 DVDEQEIIPKL-FRQPRKQVLEADQHDGTVKVIEQEDFKLPTVKPSENEE 1132
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.136 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,449,039
Number of Sequences: 27539
Number of extensions: 408275
Number of successful extensions: 926
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 912
Number of HSP's gapped (non-prelim): 12
length of query: 390
length of database: 12,573,161
effective HSP length: 83
effective length of query: 307
effective length of database: 10,287,424
effective search space: 3158239168
effective search space used: 3158239168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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