GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002460-TA|BGIBMGA002460-PA|IPR001900|Ribonuclease II and
R
         (390 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   0.84 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.8  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.84
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 22  IEIFPKEEWRKPSNIVLEDKTEDPENILEEETVLLDAAKPVD 63
           +E  PK  W K   +  +D   D + ++E    +L  ++P D
Sbjct: 202 LEPSPKTPWYKGWKVERKDGNADGKTLIEALDAILPPSRPTD 243


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
          protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 27 KEEWRKPSNIVLEDKTE 43
          K +WRKP   ++E+KT+
Sbjct: 34 KIQWRKPKPAMVEEKTQ 50


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 177 VLNCLPPNDWTIPEEERQK 195
           +LN LPP+     EEE++K
Sbjct: 525 LLNALPPSSMKETEEEKKK 543


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 106 EKRIPRVRIETRQSEILASQRILVALDS 133
           E R P + +ET  SE++ S  +  +LDS
Sbjct: 397 ELRDPSLFVETSASELVESSVLFPSLDS 424


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 201 DVC--VCSVDPPGCTDIDDALHARRLGSSD 228
           DVC     + P G T+ID A+   + GS+D
Sbjct: 646 DVCRGKLKLPPDGRTEIDVAIKTLKPGSAD 675


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,584
Number of Sequences: 429
Number of extensions: 4237
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 390
length of database: 140,377
effective HSP length: 59
effective length of query: 331
effective length of database: 115,066
effective search space: 38086846
effective search space used: 38086846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)