GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002459-TA|BGIBMGA002459-PA|IPR008388|ATPase, V1 complex,
subunit S1
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    29   1.0  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   2.3  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    26   9.4  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    26   9.4  

>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 34  TAKDKLGTPFTHLRRGLIERKVKFF 58
           TA  KLG+PF H+ R +++R    F
Sbjct: 173 TASPKLGSPFNHINRPVLDRSPSSF 197


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 10/37 (27%), Positives = 23/37 (62%)

Query: 96  IYVFFNDYENETRTMALRRHDTIIRDVYMNMQELQRG 132
           I+ F +++EN+     L+ H  +I + Y++  ++Q+G
Sbjct: 766 IHEFPSEWENDYAPFLLKEHHKVIGETYVSSFDIQQG 802


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
          subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 16 RTEGIIIFVEELLSFEEITAKDKLGTPFTHLRRGLIERKVKFFPAVFEPYKVLAQIFHSL 75
          +T  +   V  LL    I A+D +   FT+     I+ +++      E  K+++  FHS+
Sbjct: 36 KTRVLTARVAYLLQKNHIAAEDLIIATFTNKAANEIKLRIEAILGNSEASKLISGTFHSI 95

Query: 76 HY 77
           Y
Sbjct: 96 AY 97


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 232 LENIALLEAGEEVGRTNVFAKAPWNWSYACGEPLQIVNTRDGSSIAIPRYRIQPL 286
           LE I  + A   +    +  + P+ W +    P+  V   + S I+ P Y I PL
Sbjct: 627 LEYIRSIIAEVNLDIVQLHGQEPFEWIHMLDRPVIKVFPLNSSEISRPNYHIVPL 681


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.136    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,613,673
Number of Sequences: 5004
Number of extensions: 66568
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 4
length of query: 359
length of database: 2,362,478
effective HSP length: 74
effective length of query: 285
effective length of database: 1,992,182
effective search space: 567771870
effective search space used: 567771870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)