GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002459-TA|BGIBMGA002459-PA|IPR008388|ATPase, V1 complex,
subunit S1
         (359 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188...    29   7.6  
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277...    29   7.6  

>10_01_0167 +
           1876793-1877402,1877423-1877642,1877760-1879534,
           1880019-1880199,1881313-1881529
          Length = 1000

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 257 WSYACGEPLQIVNTRDGSSIAIPRYRIQPLGPSIILRNGSSSNVTFGP 304
           WS +  + + +V   +GSSI I   RI  +G S  L NG   N    P
Sbjct: 286 WSISAWKAISVVFPENGSSIIIVTTRISDVGRSCCL-NGIDRNFEMEP 332


>04_04_1144 +
           31222556-31222633,31223238-31227665,31227724-31227789,
           31227790-31228014,31228097-31228255,31228393-31228551,
           31228855-31229013,31229371-31229490,31229604-31229825
          Length = 1871

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 44  THLRRGLIERKVKFFPAVFEPYKVLAQIFHSLHYNTFHLDSAYNLSLKSASYIYVFFNDY 103
           T  +  L+E++VK     F  ++  A   HS+H  +  L+S  + S   A   +    D 
Sbjct: 550 TTSKNQLLEQEVKDLSDKFTEHQEQA---HSVHERSLELESLLHTSKSDAEVAHTRTQDL 606

Query: 104 ENETRT 109
           ENE  T
Sbjct: 607 ENELNT 612


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.136    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,599,798
Number of Sequences: 37544
Number of extensions: 373881
Number of successful extensions: 624
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 624
Number of HSP's gapped (non-prelim): 2
length of query: 359
length of database: 14,793,348
effective HSP length: 83
effective length of query: 276
effective length of database: 11,677,196
effective search space: 3222906096
effective search space used: 3222906096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)