GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002459-TA|BGIBMGA002459-PA|IPR008388|ATPase, V1 complex,
subunit S1
         (359 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y18448-1|CAA77176.1| 3851|Homo sapiens Bassoon protein protein.        31   4.7  
AF052224-1|AAC83555.1| 3926|Homo sapiens neuronal double zinc fi...    31   4.7  
AB007894-1|BAA23707.1| 1571|Homo sapiens KIAA0434 protein.             31   4.7  
U91934-1|AAB49727.1|  684|Homo sapiens retina-derived POU-domain...    31   6.2  

>Y18448-1|CAA77176.1| 3851|Homo sapiens Bassoon protein protein.
          Length = 3851

 Score = 31.5 bits (68), Expect = 4.7
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 270  TRDGSSIAIPRYRIQPLGPSIILRNG---SSSNVTFGPTVNCC 309
            T+D +S A    R++PLGP    R G       V  GPT+ CC
Sbjct: 3166 TKDSTSTAPDSQRLEPLGPGSSGRPGKEPGEPGVLDGPTLPCC 3208


>AF052224-1|AAC83555.1| 3926|Homo sapiens neuronal double zinc finger
            protein protein.
          Length = 3926

 Score = 31.5 bits (68), Expect = 4.7
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 270  TRDGSSIAIPRYRIQPLGPSIILRNG---SSSNVTFGPTVNCC 309
            T+D +S A    R++PLGP    R G       V  GPT+ CC
Sbjct: 3241 TKDSTSTAPDSQRLEPLGPGSSGRPGKEPGEPGVLDGPTLPCC 3283


>AB007894-1|BAA23707.1| 1571|Homo sapiens KIAA0434 protein.
          Length = 1571

 Score = 31.5 bits (68), Expect = 4.7
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 270 TRDGSSIAIPRYRIQPLGPSIILRNG---SSSNVTFGPTVNCC 309
           T+D +S A    R++PLGP    R G       V  GPT+ CC
Sbjct: 886 TKDSTSTAPDSQRLEPLGPGSSGRPGKEPGEPGVLDGPTLPCC 928


>U91934-1|AAB49727.1|  684|Homo sapiens retina-derived POU-domain
           factor-1 protein.
          Length = 684

 Score = 31.1 bits (67), Expect = 6.2
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 111 ALRRHDTIIRDVYMNMQELQRGPIVAFYTGKTNPAVIEKPRFISIEPMP 159
           A+ RH TI+R  +   QE Q   I +  T K NP ++   RF  ++  P
Sbjct: 514 AICRH-TILRSHFFLPQEAQENTIASSLTAKLNPGLLYPARFEKLDITP 561


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.322    0.136    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,748,202
Number of Sequences: 224733
Number of extensions: 1994996
Number of successful extensions: 2707
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2707
Number of HSP's gapped (non-prelim): 4
length of query: 359
length of database: 73,234,838
effective HSP length: 91
effective length of query: 268
effective length of database: 52,784,135
effective search space: 14146148180
effective search space used: 14146148180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 66 (30.7 bits)