GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002459-TA|BGIBMGA002459-PA|IPR008388|ATPase, V1 complex,
subunit S1
         (359 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical...    31   1.7  
AF016446-6|AAC24162.1|  322|Caenorhabditis elegans Serpentine re...    30   2.2  
AF040654-2|AAK21449.2| 1014|Caenorhabditis elegans Hypothetical ...    30   2.9  
U42839-6|ABD63236.1|   88|Caenorhabditis elegans Hypothetical pr...    28   8.9  
U42839-5|AAM54196.1|  133|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.2 protein.
          Length = 1140

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%)

Query: 18  EGIIIFVEELLSFEEITAKDKLGTPFTHLRRGLIERKVKFFPAVFEPYKVLAQIFHSLHY 77
           +GI+IF+ E+ S E +T+ D      + +   L   K K++    E Y V AQ   + H 
Sbjct: 355 KGIVIFLNEMESMEGVTSDDSANIELSDMASHL--PKFKYW--TLEKYNVYAQ---NQHL 407

Query: 78  NTFHLD-SAYNLSLKSASYIYVFFNDYE 104
              H+   + NL  K+ +  + + N  +
Sbjct: 408 RNIHISYPSLNLVYKAVAEFFPYKNSLD 435


>AF016446-6|AAC24162.1|  322|Caenorhabditis elegans Serpentine
           receptor, class h protein20 protein.
          Length = 322

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 66  KVLAQIFHSLHYNTFHLDSAYNLSLKSASYIYVFFNDYENET 107
           KV  Q+  SL + T  +  A  L + +  +IY FFN Y++ET
Sbjct: 232 KVQNQLLKSLVFQT--IIHAIMLGIPNCMFIYAFFNGYKDET 271


>AF040654-2|AAK21449.2| 1014|Caenorhabditis elegans Hypothetical
           protein R06B10.2 protein.
          Length = 1014

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 18  EGIIIFVEELLSFEEITAKDKLGTPFTHLRRGLIERKVKFFPAVFEPYKVLAQIFHSLHY 77
           +GI+IF+ E+ S E +T+ D      + +   L     KF     E Y V AQ   + H 
Sbjct: 119 KGIVIFLNEMESMEGVTSDDDANIKLSDMAPHL----PKFKDWTLEEYNVYAQ---NQHL 171

Query: 78  NTFHLD-SAYNLSLKSASYIYVFFNDYE 104
              H+   + NL  K+ +  + + N  +
Sbjct: 172 RNIHISYPSLNLVYKAVAEFFPYKNSLD 199


>U42839-6|ABD63236.1|   88|Caenorhabditis elegans Hypothetical
           protein F11C7.6b protein.
          Length = 88

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)

Query: 287 GPSIILRN-GSSSNVTFGPTVNCC 309
           G SI +++ G+S N+ F PTV+CC
Sbjct: 28  GDSIEIQSCGTSDNICFYPTVSCC 51


>U42839-5|AAM54196.1|  133|Caenorhabditis elegans Hypothetical
           protein F11C7.6a protein.
          Length = 133

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)

Query: 287 GPSIILRN-GSSSNVTFGPTVNCC 309
           G SI +++ G+S N+ F PTV+CC
Sbjct: 73  GDSIEIQSCGTSDNICFYPTVSCC 96


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.136    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,566,831
Number of Sequences: 27539
Number of extensions: 351291
Number of successful extensions: 736
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 736
Number of HSP's gapped (non-prelim): 5
length of query: 359
length of database: 12,573,161
effective HSP length: 82
effective length of query: 277
effective length of database: 10,314,963
effective search space: 2857244751
effective search space used: 2857244751
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)