GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002459-TA|BGIBMGA002459-PA|IPR008388|ATPase, V1 complex,
subunit S1
         (359 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    29   0.062
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.1  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 0.062
 Identities = 13/52 (25%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 196 VVAEETWS-RNKLSTKVAYTDFELLFN--FDLTRQDEWVLENIALLEAGEEV 244
           VV E  WS + + +  V ++  +++ +  +D+  +D+W + +IALL+  +++
Sbjct: 216 VVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDI 267


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 95  YIYVFFNDYENETRTMALRRHDT--IIRDVYMNMQELQRGPIVAFYT 139
           +I   FND   + +   L R     II +++ NM +++R  I   YT
Sbjct: 386 FILYDFNDIFEKDQASFLERERFLGIINNIFKNMSQIEREAITFQYT 432


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 95  YIYVFFNDYENETRTMALRRHDT--IIRDVYMNMQELQRGPIVAFYT 139
           +I   FND   + +   L R     II +++ NM +++R  I   YT
Sbjct: 386 FILYDFNDIFEKDQASFLERERFLGIINNIFKNMSQIEREAITFQYT 432


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 9/55 (16%)

Query: 162 NNLDVTVVSEGAMFRFSGVTVATP-------TRRATFNQMPVVA--EETWSRNKL 207
           NN D+TVVS G++ R +      P       +    FN+ P VA   ++ S NKL
Sbjct: 433 NNADLTVVSGGSVLRATKEYNTVPIIAESYGSGSTNFNERPAVAVVSKSSSINKL 487


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 9/55 (16%)

Query: 162 NNLDVTVVSEGAMFRFSGVTVATP-------TRRATFNQMPVVA--EETWSRNKL 207
           NN D+TVVS G++ R +      P       +    FN+ P VA   ++ S NKL
Sbjct: 433 NNADLTVVSGGSVLRATKEYNTVPIIAESYGSGSTNFNERPAVAVVSKSSSINKL 487


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 9/55 (16%)

Query: 162 NNLDVTVVSEGAMFRFSGVTVATP-------TRRATFNQMPVVA--EETWSRNKL 207
           NN D+TVVS G++ R +      P       +    FN+ P VA   ++ S NKL
Sbjct: 433 NNADLTVVSGGSVLRATKEYNTVPIIAESYGSGSTNFNERPAVAVVSKSSSINKL 487


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.136    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,901
Number of Sequences: 429
Number of extensions: 4609
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 8
length of query: 359
length of database: 140,377
effective HSP length: 59
effective length of query: 300
effective length of database: 115,066
effective search space: 34519800
effective search space used: 34519800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)