GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002458-TA|BGIBMGA002458-PA|IPR000276|Rhodopsin-like GPCR
superfamily, IPR000611|Neuropeptide Y receptor
         (251 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    26   4.5  
SPAC18G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.0  
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    25   7.9  

>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 24  VMCKVVNFSQAVSVLVSAYTLLAISIDR 51
           V   +VNFS+AVS L     +LA S+DR
Sbjct: 849 VSIPMVNFSEAVSNLGLVAGILATSVDR 876


>SPAC18G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 114

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 102 CKVDICSEQWADGKQSEHYTFALLTLQFTLPLTALVYTY 140
           C  D+C   W        +   +L   FT+P+T ++  Y
Sbjct: 29  CVADLCHAIWMFNGGCADWRLQILKEGFTVPMTGIISQY 67


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 7   PFSFVSMLVLRYWPFGAVMCKVVNFSQAVSVLVSAYTLLAISIDRYIVIMRPLK 60
           PF  V+  V R   FG V  +    SQ    LV  Y    + ID+YI   RPLK
Sbjct: 310 PFQLVTGRVWRGCAFGGVKGR----SQLPD-LVKEYLDHKLEIDKYITHRRPLK 358


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.328    0.139    0.482 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 959,864
Number of Sequences: 5004
Number of extensions: 33425
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 3
length of query: 251
length of database: 2,362,478
effective HSP length: 71
effective length of query: 180
effective length of database: 2,007,194
effective search space: 361294920
effective search space used: 361294920
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 53 (25.4 bits)