GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002457-TA|BGIBMGA002457-PA|IPR002086|Aldehyde
dehydrogenase, IPR012303|NAD-dependent aldehyde dehydrogenase
         (486 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    23   6.3  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    23   6.3  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   8.4  

>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 101 VYKNCLRILSGIPDSVRYLGSLADKIQGDTIPTD 134
           V K  LR+   +P   R  GS      G TIP D
Sbjct: 351 VIKESLRLYPSVPFISRVSGSEIQTKTGYTIPKD 384


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 101 VYKNCLRILSGIPDSVRYLGSLADKIQGDTIPTD 134
           V K  LR+   +P   R  GS      G TIP D
Sbjct: 351 VIKESLRLYPSVPFISRVSGSEIQTKTGYTIPKD 384


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)

Query: 234 LEVGKLIQ-KAAGTNNLKRVTLEL 256
           L V  +I+ +AAG NN++RV  E+
Sbjct: 67  LNVFSIIKSRAAGNNNIQRVVPEI 90


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.137    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,354
Number of Sequences: 317
Number of extensions: 4525
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 3
length of query: 486
length of database: 114,650
effective HSP length: 59
effective length of query: 427
effective length of database: 95,947
effective search space: 40969369
effective search space used: 40969369
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)