GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002456-TA|BGIBMGA002456-PA|IPR001452|Src homology-3,
IPR000108|Neutrophil cytosol factor 2
         (817 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          27   0.39 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    26   1.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    26   1.2  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    26   1.2  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    26   1.2  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    26   1.2  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    24   3.6  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    24   3.6  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    24   4.8  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 27.5 bits (58), Expect = 0.39
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 711 ERVERIEERSPEKPVAAVGGDRTSASSTLERRPQPGRGEK 750
           E V++ +E   EKP  +    + S+S + + RP+PG G K
Sbjct: 78  ENVKKEDESDEEKPTTSFKL-KDSSSDSEDERPRPGGGTK 116


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 211  PAATAEVEEKKPERPSKAAT 230
            P A  ++EEKKPE+  K  T
Sbjct: 1045 PNAVQKIEEKKPEKKDKVLT 1064


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 211  PAATAEVEEKKPERPSKAAT 230
            P A  ++EEKKPE+  K  T
Sbjct: 1045 PNAVQKIEEKKPEKKDKVLT 1064


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 766 YRISNLEKLIEVQNSMFKASIEE 788
           Y++++LEK  EV  S+FK  + E
Sbjct: 73  YKLNDLEKRREVYESIFKVEVHE 95


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 766 YRISNLEKLIEVQNSMFKASIEE 788
           Y++++LEK  EV  S+FK  + E
Sbjct: 233 YKLNDLEKRREVYESIFKVEVHE 255


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 766 YRISNLEKLIEVQNSMFKASIEE 788
           Y++++LEK  EV  S+FK  + E
Sbjct: 233 YKLNDLEKRREVYESIFKVEVHE 255


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 234 YPILNKYTEKTASVKELTT 252
           Y ++N+ T  TA VK LTT
Sbjct: 240 YEVINRQTLDTADVKTLTT 258


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 234 YPILNKYTEKTASVKELTT 252
           Y ++N+ T  TA VK LTT
Sbjct: 166 YEVINRQTLDTADVKTLTT 184


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 740 ERRPQPGRGEKAPPADGTDALIAQLNYRISNLEKLIEVQNSM 781
           ++ P P +GEK   A  T   + Q++   +N  + ++ +N M
Sbjct: 107 KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 148


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,663
Number of Sequences: 317
Number of extensions: 5149
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 9
length of query: 817
length of database: 114,650
effective HSP length: 62
effective length of query: 755
effective length of database: 94,996
effective search space: 71721980
effective search space used: 71721980
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)