Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002456-TA|BGIBMGA002456-PA|IPR001452|Src homology-3,
IPR000108|Neutrophil cytosol factor 2
(817 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0481 + 8789890-8789949,8790325-8790441,8790532-8790601,879... 41 0.003
10_08_0613 - 19232706-19232822,19232936-19233010,19233132-192332... 40 0.006
04_04_0656 - 26988766-26988830,26989311-26989371,26989514-269895... 39 0.018
01_06_1210 + 35430143-35430796,35430912-35431004,35431397-354315... 36 0.098
01_01_1069 - 8420454-8420670,8421272-8421447,8421556-8421738,842... 33 0.92
08_01_0404 - 3590296-3590409,3590529-3590819,3592414-3592461,359... 33 1.2
09_04_0613 + 18953761-18953932,18954672-18954799,18954885-189549... 32 1.6
10_08_0931 - 21647562-21649037 31 2.8
07_03_0542 - 19256688-19256804,19257181-19257255,19257337-192574... 31 2.8
12_02_0726 - 22552005-22552035,22552507-22552598,22552970-225530... 31 3.7
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 31 3.7
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42... 31 3.7
08_01_1061 - 10804269-10804352,10804464-10804593,10804696-108047... 31 4.9
01_06_1300 + 36116511-36116636,36116672-36116734,36117782-361178... 31 4.9
12_02_0856 + 23708234-23708420,23709364-23709567,23709689-237099... 30 6.5
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 30 6.5
01_06_0380 - 28874699-28874732,28875077-28876116 30 6.5
01_06_1076 + 34359922-34360452 30 8.5
>03_02_0481 +
8789890-8789949,8790325-8790441,8790532-8790601,
8790688-8790836,8791520-8791621,8791692-8791892,
8792589-8792651,8792791-8793009,8793681-8793755,
8794003-8794101,8794521-8794691
Length = 441
Score = 41.1 bits (92), Expect = 0.003
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 158 VLFTYAAVNDDELNLNEGDIVTVISKEAPDRGWWRGELHGRVGLFPDNFVQLLPAATAEV 217
V+ + A D EL+++ GD V V+ + AP+ GW GE G+ G FP +V+ A A
Sbjct: 328 VIHPFDAQADGELSISVGDYV-VVRQVAPN-GWSEGECKGKAGWFPSAYVEQRDKAPASK 385
Query: 218 EEK 220
+ K
Sbjct: 386 QSK 388
Score = 37.9 bits (84), Expect = 0.032
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 20 YDASEADELTIRPGDVIRDVERLPGGWWRGELRGNRGMFPDNFV 63
+DA EL+I GD + + P GW GE +G G FP +V
Sbjct: 332 FDAQADGELSISVGDYVVVRQVAPNGWSEGECKGKAGWFPSAYV 375
>10_08_0613 -
19232706-19232822,19232936-19233010,19233132-19233287,
19233412-19233549,19233571-19233771,19233985-19234086,
19234960-19235111,19235213-19235282,19235416-19235532,
19235674-19235733
Length = 395
Score = 40.3 bits (90), Expect = 0.006
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 161 TYAAVNDDELNLNEGDIVTVISKEAPDRGWWRGELHGRVGLFPDNFVQ 208
+Y A ++ ELNL GD + V ++ + GW GE G+ G FP ++++
Sbjct: 336 SYRAESETELNLAAGDYIVV--RKVSNNGWAEGECRGKAGWFPYDYIE 381
Score = 33.9 bits (74), Expect = 0.52
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 19 AYDASEADELTIRPGD--VIRDVERLPGGWWRGELRGNRGMFPDNFV 63
+Y A EL + GD V+R V GW GE RG G FP +++
Sbjct: 336 SYRAESETELNLAAGDYIVVRKVSN--NGWAEGECRGKAGWFPYDYI 380
>04_04_0656 -
26988766-26988830,26989311-26989371,26989514-26989588,
26989694-26989849,26989975-26990061,26990140-26990340,
26990942-26991043,26991223-26991374,26991488-26991557,
26991646-26991765,26992708-26992761
Length = 380
Score = 38.7 bits (86), Expect = 0.018
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 159 LFTYAAVNDDELNLNEGDIVTVISKEAPDRGWWRGELHGRVGLFP 203
L ++ A ++ ELNL+ GDIV V ++ GW GE G+ G FP
Sbjct: 316 LDSFKAESESELNLSAGDIVIV--RKISTNGWAEGECKGKAGWFP 358
Score = 31.5 bits (68), Expect = 2.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 19 AYDASEADELTIRPGDVIRDVERLPGGWWRGELRGNRGMFP 59
++ A EL + GD++ + GW GE +G G FP
Sbjct: 318 SFKAESESELNLSAGDIVIVRKISTNGWAEGECKGKAGWFP 358
>01_06_1210 +
35430143-35430796,35430912-35431004,35431397-35431546,
35431817-35432076,35433378-35433641,35434475-35434682
Length = 542
Score = 36.3 bits (80), Expect = 0.098
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 720 SPEKPVAAVGGDRTSASSTLERRPQPGRGEKAPPA 754
SPE PV A GG A++ PQP R PPA
Sbjct: 77 SPETPVDASGGSNAGATAPTRDAPQPDRSRSTPPA 111
>01_01_1069 -
8420454-8420670,8421272-8421447,8421556-8421738,
8421885-8421980,8422064-8422192,8422266-8422445,
8422524-8422634,8422714-8422869,8422983-8423078,
8423160-8423327,8423402-8423642,8423724-8423851,
8424042-8424134,8424214-8424309,8424431-8424523,
8424741-8424850,8424999-8425134,8425215-8425315,
8426029-8426152,8426237-8426411,8426523-8426681,
8427423-8427536,8427669-8427848,8428926-8429005
Length = 1113
Score = 33.1 bits (72), Expect = 0.92
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 707 SSTVERVERIEERSPEKPVAAV-GGDRTSASSTLERRPQPGRGEKAPPADGTDALIAQ 763
S + R++ I+ SP KP + GGD S S ++ R R +KA P + + L AQ
Sbjct: 677 SPNIGRMDHIDRNSPAKPSPIMNGGDPASRSIDIKPRISEERPDKAKPWELMEVLNAQ 734
>08_01_0404 -
3590296-3590409,3590529-3590819,3592414-3592461,
3592559-3592795,3593668-3593704,3594311-3594627
Length = 347
Score = 32.7 bits (71), Expect = 1.2
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 166 NDDELNLNEGDIVTVISKEAPDRGWWRGELHGRVGLFPDNFVQLLPAATAEVEEKKPERP 225
+DD +N + G+ + +++E D W +G H + L+PD F++ L E+E +
Sbjct: 216 DDDVVNWSHGNELWKLAREPYDPLWIKGGGHCNLELYPD-FIRHLSKFIREMENITTKTR 274
Query: 226 SKAATNSIYPILNKYTEKTASVKELTT 252
K S+ P K + AS TT
Sbjct: 275 LKKIRQSLQPAPKKVHHR-ASTGTTTT 300
>09_04_0613 +
18953761-18953932,18954672-18954799,18954885-18954956,
18955033-18955146,18955547-18955615,18955691-18955747,
18956262-18956315,18956387-18956449,18956543-18956605,
18956803-18956967,18957111-18957266,18957315-18957416
Length = 404
Score = 32.3 bits (70), Expect = 1.6
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 21/134 (15%)
Query: 693 IEMNSTK-TSSVFEKSSTVERVER-IEERSPEKPVAAVGGDRTSASSTLERRPQPGRGEK 750
+E + TK T + K ++++E+ IEE+S K +A + + TS LE + E+
Sbjct: 57 LESSITKQTQELKSKDDGIQKLEKLIEEKS--KKIATLQSEITS----LETKRSLAAEEQ 110
Query: 751 APPADGTDALIAQLNYRISNLEKLIEVQNSMFKA----------SIEELNAKLKLESEKR 800
A A+ A +L +I L+K IE QNS ++ELNAKL+ +
Sbjct: 111 AGKAN---ARAIELEKQIEKLKKDIEAQNSKKSTVEARAGDADKKVQELNAKLEKLQKTS 167
Query: 801 QALQTEIEKLAHCV 814
+ I+K H +
Sbjct: 168 DEQKRRIQKTEHAL 181
>10_08_0931 - 21647562-21649037
Length = 491
Score = 31.5 bits (68), Expect = 2.8
Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 7/135 (5%)
Query: 602 STSSITSRMCVLESFEETKVRHSLDSKKETPDRSTPDPVPVIKPVMHSPTAAGRTFL-SM 660
S +S S+ + ++ E+ R K +P P P P + H P A RT S
Sbjct: 243 SPASSLSKETLAKASEDYSSRRR-SPYKSSPPAPPPPPPPFLVHGYHPPAAERRTAAKSF 301
Query: 661 VDDVXXXXXXXXXXXXXXXXXSTKHDKHVTDKIEMNSTKTSSVFEKSSTVERV----ERI 716
+++ S I+ +S+ +SS + + +V + E +
Sbjct: 302 KEELQEQTSHSFTTSEFSRSSSNSSSAKPRISID-SSSSSSSYYPVAKSVRTIRGGRESL 360
Query: 717 EERSPEKPVAAVGGD 731
+ +S E+P AV GD
Sbjct: 361 QSQSQEQPDVAVAGD 375
>07_03_0542 -
19256688-19256804,19257181-19257255,19257337-19257426,
19257506-19257568,19257659-19257856,19257973-19258074,
19259276-19259424,19260136-19260205,19260460-19260582,
19261541-19261600
Length = 348
Score = 31.5 bits (68), Expect = 2.8
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 162 YAAVNDDELNLNEGDIVTVISKEAPDRGWWRGELHGRVGLFPDNFVQ 208
+ + EL+L GD V V+ + AP+ GW GE G G FP +V+
Sbjct: 290 FNGTTEKELSLIVGDYV-VVRQIAPN-GWAEGECKGVAGWFPAAYVE 334
Score = 31.5 bits (68), Expect = 2.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 20 YDASEADELTIRPGDVIRDVERLPGGWWRGELRGNRGMFPDNFV 63
++ + EL++ GD + + P GW GE +G G FP +V
Sbjct: 290 FNGTTEKELSLIVGDYVVVRQIAPNGWAEGECKGVAGWFPAAYV 333
>12_02_0726 -
22552005-22552035,22552507-22552598,22552970-22553094,
22553221-22553311,22553475-22553755,22554211-22554394,
22554499-22554583,22554692-22554782,22554909-22555293,
22555457-22555669,22555873-22556418,22556572-22556788,
22556907-22557058,22557519-22557663,22557846-22557907,
22559130-22559291,22559393-22559482,22560055-22560215,
22560907-22560997,22561125-22561308,22561556-22561737,
22561857-22562086,22562622-22562685
Length = 1287
Score = 31.1 bits (67), Expect = 3.7
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 754 ADGTDALIAQLNYRISNLEKLIEVQNSMFKASIEELNAKLKLESEK-RQALQTEIEKLAH 812
A+G + L+A + ++ +K++ + + ++ L+ + L S K RQA Q+E+ +LAH
Sbjct: 636 AEGWEELLADVLPDLAECQKILNDEAGYLTSCVKLLSLESGLFSSKERQAFQSEVVRLAH 695
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 31.1 bits (67), Expect = 3.7
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 758 DALIAQLNYRISNLEKLIEVQNSMFKASIEELNAKL-KLE--SEKRQALQTEIEKLAHCV 814
D+ + LN R++ LE IE + +A +E+NAKL K++ EK ++ +E E++A V
Sbjct: 1164 DSEVKDLNERLAALESEIESLTHVNEAMKQEINAKLVKVDELQEKLSSISSEKEEVAEKV 1223
>03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-420209,
420334-420502,421115-424273,424367-424485,424915-425116
Length = 1363
Score = 31.1 bits (67), Expect = 3.7
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 705 EKSSTVERVERIEERSPEKPVAAVGGDRTSASSTLERRPQPGRGEKAPPADGTDALIAQL 764
EK+ VE +ER E S ++ +R +A+ R R +K + AQL
Sbjct: 969 EKTLEVENLER-EVMSLTAQASSTQEERENATVEAIREVSVLRADKVKLEASLQDVSAQL 1027
Query: 765 NYRISNLEKLIEVQNSMFKASIEELNAKLKLE 796
+ S LE L + S K ++ LNA + E
Sbjct: 1028 RHYESQLEDLRKESKSKIKGLVDSLNASKQSE 1059
>08_01_1061 -
10804269-10804352,10804464-10804593,10804696-10804745,
10805154-10805216,10806235-10806375,10806541-10806925,
10807735-10808339
Length = 485
Score = 30.7 bits (66), Expect = 4.9
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 721 PEKPVAAVGGDRTSASSTLERRPQPGRGEKAPPADGTDALIAQLNYRI 768
P AAV T S L RR + G GE+ P + +A RI
Sbjct: 210 PSNEAAAVAPPATQPSQGLSRRSRAGPGERQQPGEAASLAVALARERI 257
>01_06_1300 +
36116511-36116636,36116672-36116734,36117782-36117833,
36118144-36118224,36118651-36118775,36118831-36118934,
36119487-36119615,36119899-36121054
Length = 611
Score = 30.7 bits (66), Expect = 4.9
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 731 DRTSASSTLERRPQPGRGEKAPPADGTDALIAQLNYRISNLEKLIEVQNSMF 782
D T S T++ P +GE + L Y+I N+E ++ V +S+F
Sbjct: 361 DHTGNSWTIQLEAAPSKGEAELSLKNEARSLGPLCYQIPNMEDVVPVSSSLF 412
>12_02_0856 +
23708234-23708420,23709364-23709567,23709689-23709918,
23710174-23710174,23710268-23710788
Length = 380
Score = 30.3 bits (65), Expect = 6.5
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
Query: 729 GGDRTSASSTLERRPQPGRGEKAPPADGT 757
GGD +SA++ P PGRG+K PP+ T
Sbjct: 6 GGDESSAAT-----PDPGRGKKRPPSPST 29
>02_04_0481 +
23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 30.3 bits (65), Expect = 6.5
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 705 EKSSTVERVERIEERSP---EKPVAAVGGDRTSASSTLERRP-QPGRGEKAPPADGTDAL 760
EK S + +ER+EE+S EK AV + ER + EK +
Sbjct: 710 EKDSLQKELERVEEKSSLLREKLSMAV---KKGKGLVQEREGLKQVLDEKKSDIEKLKHA 766
Query: 761 IAQLNYRISNLEKLIEVQNSM---FKASIEELNAKLKLESEKRQALQTEIEKLAHCVTQ 816
+ + N + NL++ ++ NS+ K + +ELN++ + + +E++KL H + +
Sbjct: 767 LDEKNAELENLKQTLDGNNSVLEKLKQAWDELNSESENIKQALDVKNSEVDKLKHALDE 825
>01_06_0380 - 28874699-28874732,28875077-28876116
Length = 357
Score = 30.3 bits (65), Expect = 6.5
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 754 ADGTDALIAQLNYRISNLEKLIEVQNSMFKASIEELNAKL-KLESEKRQALQTEIEKLA 811
A +DA + L + +L+KL++ + FKA + N K+ SE+ ++ E E +A
Sbjct: 225 ASSSDAKVLALREELEDLQKLLQAEKDEFKADKRDSNQLAGKVGSERAVKMRLEEEVIA 283
>01_06_1076 + 34359922-34360452
Length = 176
Score = 29.9 bits (64), Expect = 8.5
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 166 NDDELNLNEGDIVTVISKEAPDRGWWRG 193
NDD+L+ N+ D+ ++ RGWWRG
Sbjct: 148 NDDDLDRNDDDLQMTTARWL--RGWWRG 173
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.129 0.369
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,899,231
Number of Sequences: 37544
Number of extensions: 683464
Number of successful extensions: 1729
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1711
Number of HSP's gapped (non-prelim): 27
length of query: 817
length of database: 14,793,348
effective HSP length: 88
effective length of query: 729
effective length of database: 11,489,476
effective search space: 8375828004
effective search space used: 8375828004
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 64 (29.9 bits)
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