GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002455-TA|BGIBMGA002455-PA|undefined
         (105 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   0.49 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   1.5  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    19   8.0  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    19   8.0  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    19   8.0  

>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 0.49
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 31  NAGHGVWT-YRVPPPMPSKKSIRLAQGLGGL 60
           N   G W  Y  P    +K S   A+GLGG+
Sbjct: 372 NGEGGAWVGYEDPDTAGNKASYARAKGLGGI 402


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 1.5
 Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 4/26 (15%)

Query: 68  HIATEPEHITGEWPYIDP----STWT 89
           H+   P+HI    PY  P    STW+
Sbjct: 283 HVYNPPDHIQQATPYSAPGPTYSTWS 308


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 29  KRNAGHGVWTYRVPPPMPSKKSIRLAQGLG 58
           +R  G  + TY+ P P     +  LA   G
Sbjct: 307 QRTGGSQILTYKNPKPYKMAIAFMLAHPYG 336


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 29  KRNAGHGVWTYRVPPPMPSKKSIRLAQGLG 58
           +R  G  + TY+ P P     +  LA   G
Sbjct: 308 QRTGGSQILTYKNPKPYKMAIAFMLAHPYG 337


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 29  KRNAGHGVWTYRVPPPMPSKKSIRLAQGLG 58
           +R  G  + TY+ P P     +  LA   G
Sbjct: 308 QRTGGSQILTYKNPKPYKMAIAFMLAHPYG 337


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.138    0.500 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,897
Number of Sequences: 317
Number of extensions: 1106
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 105
length of database: 114,650
effective HSP length: 49
effective length of query: 56
effective length of database: 99,117
effective search space:  5550552
effective search space used:  5550552
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
S2: 38 (19.4 bits)