GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002455-TA|BGIBMGA002455-PA|undefined
         (105 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.05c |cox9||cytochrome c oxidase subunit VIIa|Schizosacc...    26   1.1  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   2.5  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    24   5.8  

>SPCC1259.05c |cox9||cytochrome c oxidase subunit
          VIIa|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 58

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 50 SIRLAQGLGGLCWWWILYH 68
          S+ +  G  G C+WW  YH
Sbjct: 19 SVTMILGTLGACYWWFGYH 37


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 49  KSIRLAQGLGGLCWWWI 65
           KS+     +GGLCWW I
Sbjct: 280 KSVFQGYLMGGLCWWII 296


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 50  SIRLAQGLGGLCWWWILYHIAT 71
           S ++  GL GL WWW+L+  A+
Sbjct: 189 STKVLFGLLGL-WWWMLFVTAS 209


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.138    0.500 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 481,890
Number of Sequences: 5004
Number of extensions: 17311
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 3
length of query: 105
length of database: 2,362,478
effective HSP length: 63
effective length of query: 42
effective length of database: 2,047,226
effective search space: 85983492
effective search space used: 85983492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)