Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002455-TA|BGIBMGA002455-PA|undefined
(105 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946 34 0.025
08_01_0641 - 5557036-5557163,5557227-5557348,5557410-5557714 30 0.41
03_03_0198 + 15361048-15361746,15361854-15361946,15362035-153621... 27 2.9
01_06_0968 + 33466574-33466607,33467087-33467115,33467438-334675... 27 2.9
12_02_0614 - 21172290-21172480,21174927-21175164 27 3.8
10_06_0038 - 9958520-9958763,9959240-9959394 27 3.8
02_01_0091 + 646299-649082 27 3.8
01_06_0580 - 30380260-30380747,30380816-30381107 26 5.0
06_03_1294 - 29080347-29081447 26 6.6
02_01_0492 - 3564344-3565036 26 6.6
07_01_0800 - 6276423-6276833 25 8.8
>03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946
Length = 447
Score = 33.9 bits (74), Expect = 0.025
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 25 LKQTKRNAGHGVWTYRVPPPMPSKKSIRLAQ 55
L R AGH VW PPP P ++ ++LAQ
Sbjct: 118 LPHLPRGAGHEVWPPHHPPPPPQQQQLQLAQ 148
>08_01_0641 - 5557036-5557163,5557227-5557348,5557410-5557714
Length = 184
Score = 29.9 bits (64), Expect = 0.41
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 50 SIRLAQGLGGLCWWWILYHIATEPEH--ITGEWPYIDPSTWTDEELGIPPDSAG 101
S+ L G G L WWW +A+ + + G + P+T E L PP S+G
Sbjct: 32 SLSLCAGCG-LGWWWCFVPLASVRDDGVVAGVGDVVVPATELAEALLRPPPSSG 84
>03_03_0198 +
15361048-15361746,15361854-15361946,15362035-15362102,
15362255-15362393,15362481-15362483
Length = 333
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 32 AGHGVWTYRVPPPMPSKKSIRLAQGLG-GLCWWWILY 67
AG G + PP P+++ + L G G W W Y
Sbjct: 57 AGAGTSVHVWAPPRPARRPVLLLHGFGASTTWQWASY 93
>01_06_0968 +
33466574-33466607,33467087-33467115,33467438-33467595,
33468319-33468436,33468520-33468708,33469008-33469343,
33469468-33469569,33469696-33469890,33469993-33470155,
33470314-33470579,33470670-33470765,33470860-33471255,
33471403-33471501
Length = 726
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 44 PMPSKKSIRLAQGLGGLCWWWILYHIATEPEHIT 77
P+P +K+ L + L C W +L H + E +T
Sbjct: 512 PLPMRKTFDLLRNLTHRCKWDVLVHGSVVKEEVT 545
>12_02_0614 - 21172290-21172480,21174927-21175164
Length = 142
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 18 NAGD-AGCLKQTKRNAGHGVWTYRVPPPMPSKKS 50
NAGD GCL ++KR G Y+ P P +KS
Sbjct: 65 NAGDEGGCLSRSKR-IGRAEEPYKSPNPQTLEKS 97
>10_06_0038 - 9958520-9958763,9959240-9959394
Length = 132
Score = 26.6 bits (56), Expect = 3.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 58 GGLCWWWILYHIATEPEHI 76
GG+CWWW + P+ +
Sbjct: 97 GGVCWWWSMSASVGGPQQL 115
>02_01_0091 + 646299-649082
Length = 927
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 21 DAGCLKQTKRNAGHGVWTYRVPPPMPSKK-SIR 52
D GCL GVW Y P PS SIR
Sbjct: 605 DKGCLMNNPSGGDSGVWKYIGPDKKPSHSVSIR 637
>01_06_0580 - 30380260-30380747,30380816-30381107
Length = 259
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 35 GVWT-YRVPPPMPSKKSIRLAQGLGGL-CWWWI 65
G+WT VP P+ S + R+A+ G L C W +
Sbjct: 138 GLWTDVGVPEPLQSSEMARMAKTYGKLWCTWQV 170
>06_03_1294 - 29080347-29081447
Length = 366
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 35 GVWTYRVPPPMPSKKSIRLAQGLGGLCWWW 64
G WT R P P S + +G WWW
Sbjct: 95 GGWTCRCSAPSPVASSSSTSTPMGS-HWWW 123
>02_01_0492 - 3564344-3565036
Length = 230
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Query: 32 AGHGV--WTYRVPPPMPSKK 49
AGH V W +R+PPP P ++
Sbjct: 160 AGHTVVAWVFRLPPPPPPEE 179
>07_01_0800 - 6276423-6276833
Length = 136
Score = 25.4 bits (53), Expect = 8.8
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 40 RVPPPMPSKKSIRLAQGLGGLCWW 63
RV +P+ ++ + G+GG+C+W
Sbjct: 102 RVAASLPAFCNVDIPIGIGGVCYW 125
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.138 0.500
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,692,169
Number of Sequences: 37544
Number of extensions: 150780
Number of successful extensions: 341
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 11
length of query: 105
length of database: 14,793,348
effective HSP length: 72
effective length of query: 33
effective length of database: 12,090,180
effective search space: 398975940
effective search space used: 398975940
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)
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