Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002455-TA|BGIBMGA002455-PA|undefined
(105 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR542121-1|CAG46918.1| 105|Homo sapiens NDUFB2 protein. 68 6e-12
AF050639-1|AAD05428.1| 105|Homo sapiens NADH-ubiquinone oxidore... 68 6e-12
BC063026-1|AAH63026.1| 95|Homo sapiens NDUFB2 protein protein. 64 6e-11
AC006344-2|AAD43191.1| 95|Homo sapiens NADH-ubiquinone oxidore... 64 6e-11
Z29505-1|CAA82631.1| 299|Homo sapiens sub2.3 protein. 31 0.48
X78137-1|CAA55016.1| 356|Homo sapiens hnRNP-E1 protein. 31 0.48
U24223-1|AAA91317.1| 356|Homo sapiens alpha-CP1 protein. 31 0.48
BC039742-1|AAH39742.1| 356|Homo sapiens poly(rC) binding protei... 31 0.48
AC016700-1|AAX93191.1| 356|Homo sapiens unknown protein. 31 0.48
AK057830-1|BAB71591.1| 165|Homo sapiens protein ( Homo sapiens ... 29 1.9
U39403-1|AAC99999.1| 500|Homo sapiens protein ( Human fetal cra... 29 3.4
D30755-1|BAA06416.2| 636|Homo sapiens KIAA0113 protein. 29 3.4
BC014008-1|AAH14008.1| 636|Homo sapiens TNIP1 protein protein. 29 3.4
BC012133-1|AAH12133.1| 636|Homo sapiens TNFAIP3 interacting pro... 29 3.4
AY012155-1|AAG42154.1| 636|Homo sapiens virion-associated nucle... 29 3.4
AJ011896-1|CAA09856.1| 635|Homo sapiens Naf1 beta protein protein. 29 3.4
AJ011895-1|CAA09855.1| 636|Homo sapiens Naf1 alpha protein prot... 29 3.4
AB252982-1|BAF48799.1| 630|Homo sapiens Nef-associated factor 1... 29 3.4
AB252973-1|BAF48790.1| 635|Homo sapiens Nef-associated factor 1... 29 3.4
AB252972-1|BAF48789.1| 636|Homo sapiens Nef-associated factor 1... 29 3.4
AB252971-1|BAF48788.1| 635|Homo sapiens Nef-associated factor 1... 29 3.4
AB252970-1|BAF48787.1| 636|Homo sapiens Nef-associated factor 1... 29 3.4
AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein. 28 4.5
AF141344-1|AAG49447.1| 119|Homo sapiens LYST-interacting protei... 27 7.8
>CR542121-1|CAG46918.1| 105|Homo sapiens NDUFB2 protein.
Length = 105
Score = 67.7 bits (158), Expect = 6e-12
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 9/85 (10%)
Query: 17 QNAGDAGCLKQTKRNAGHGVWT---YRVPPPMPSKKSIRLAQGLGGLCWWWILYHIATEP 73
+ AGD G R+AG GV YR P + ++ + ++ GL W+WIL+ +
Sbjct: 24 RTAGDGGV-----RHAGGGVHIEPRYRQFPQL-TRSQVFQSEFFSGLMWFWILWRFWHDS 77
Query: 74 EHITGEWPYIDPSTWTDEELGIPPD 98
E + G +PY DPS WTDEELGIPPD
Sbjct: 78 EEVLGHFPYPDPSQWTDEELGIPPD 102
>AF050639-1|AAD05428.1| 105|Homo sapiens NADH-ubiquinone
oxidoreductase AGGG subunit protein.
Length = 105
Score = 67.7 bits (158), Expect = 6e-12
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 9/85 (10%)
Query: 17 QNAGDAGCLKQTKRNAGHGVWT---YRVPPPMPSKKSIRLAQGLGGLCWWWILYHIATEP 73
+ AGD G R+AG GV YR P + ++ + ++ GL W+WIL+ +
Sbjct: 24 RTAGDGGV-----RHAGGGVHIEPRYRQFPQL-TRSQVFQSEFFSGLMWFWILWRFWHDS 77
Query: 74 EHITGEWPYIDPSTWTDEELGIPPD 98
E + G +PY DPS WTDEELGIPPD
Sbjct: 78 EEVLGHFPYPDPSQWTDEELGIPPD 102
>BC063026-1|AAH63026.1| 95|Homo sapiens NDUFB2 protein protein.
Length = 95
Score = 64.5 bits (150), Expect = 6e-11
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 44 PMPSKKSIRLAQGLGGLCWWWILYHIATEPEHITGEWPYIDPSTWTDEELGIPPD 98
P ++ + ++ GL W+WIL+ + E + G +PY DPS WTDEELGIPPD
Sbjct: 38 PQLTRSQVFQSEFFSGLMWFWILWRFWHDSEEVLGHFPYPDPSQWTDEELGIPPD 92
>AC006344-2|AAD43191.1| 95|Homo sapiens NADH-ubiquinone
oxidoreductase AGGG subunit protein.
Length = 95
Score = 64.5 bits (150), Expect = 6e-11
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 44 PMPSKKSIRLAQGLGGLCWWWILYHIATEPEHITGEWPYIDPSTWTDEELGIPPD 98
P ++ + ++ GL W+WIL+ + E + G +PY DPS WTDEELGIPPD
Sbjct: 38 PQLTRSQVFQSEFFSGLMWFWILWRFWHDSEEVLGHFPYPDPSQWTDEELGIPPD 92
>Z29505-1|CAA82631.1| 299|Homo sapiens sub2.3 protein.
Length = 299
Score = 31.5 bits (68), Expect = 0.48
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 70 ATEPEHITGEWPYIDPSTWTDEELGIPPDSAGCI 103
++ PE + G W +D ST T EL IP + GCI
Sbjct: 262 SSSPE-VKGYWASLDASTQTTHELTIPNNLIGCI 294
>X78137-1|CAA55016.1| 356|Homo sapiens hnRNP-E1 protein.
Length = 356
Score = 31.5 bits (68), Expect = 0.48
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 70 ATEPEHITGEWPYIDPSTWTDEELGIPPDSAGCI 103
++ PE + G W +D ST T EL IP + GCI
Sbjct: 262 SSSPE-VKGYWASLDASTQTTHELTIPNNLIGCI 294
>U24223-1|AAA91317.1| 356|Homo sapiens alpha-CP1 protein.
Length = 356
Score = 31.5 bits (68), Expect = 0.48
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 70 ATEPEHITGEWPYIDPSTWTDEELGIPPDSAGCI 103
++ PE + G W +D ST T EL IP + GCI
Sbjct: 262 SSSPE-VKGYWASLDASTQTTHELTIPNNLIGCI 294
>BC039742-1|AAH39742.1| 356|Homo sapiens poly(rC) binding protein 1
protein.
Length = 356
Score = 31.5 bits (68), Expect = 0.48
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 70 ATEPEHITGEWPYIDPSTWTDEELGIPPDSAGCI 103
++ PE + G W +D ST T EL IP + GCI
Sbjct: 262 SSSPE-VKGYWASLDASTQTTHELTIPNNLIGCI 294
>AC016700-1|AAX93191.1| 356|Homo sapiens unknown protein.
Length = 356
Score = 31.5 bits (68), Expect = 0.48
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 70 ATEPEHITGEWPYIDPSTWTDEELGIPPDSAGCI 103
++ PE + G W +D ST T EL IP + GCI
Sbjct: 262 SSSPE-VKGYWASLDASTQTTHELTIPNNLIGCI 294
>AK057830-1|BAB71591.1| 165|Homo sapiens protein ( Homo sapiens
cDNA FLJ25101 fis, clone CBR01328. ).
Length = 165
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 37 WTYRVPPPMPSKKSIRLAQGLGGLCW 62
W YR PPP P+ + G+ LCW
Sbjct: 55 WYYRCPPPQPANFCVFTRDGV-SLCW 79
>U39403-1|AAC99999.1| 500|Homo sapiens protein ( Human fetal
craniofacial mRNA, partial cds. ).
Length = 500
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 67 YHIATEPEHITGEWPYIDP 85
YH+ PEH+ G +PY P
Sbjct: 400 YHVEPHPEHLCGAYPYAYP 418
>D30755-1|BAA06416.2| 636|Homo sapiens KIAA0113 protein.
Length = 636
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 67 YHIATEPEHITGEWPYIDP 85
YH+ PEH+ G +PY P
Sbjct: 535 YHVEPHPEHLCGAYPYAYP 553
>BC014008-1|AAH14008.1| 636|Homo sapiens TNIP1 protein protein.
Length = 636
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 67 YHIATEPEHITGEWPYIDP 85
YH+ PEH+ G +PY P
Sbjct: 535 YHVEPHPEHLCGAYPYAYP 553
>BC012133-1|AAH12133.1| 636|Homo sapiens TNFAIP3 interacting
protein 1 protein.
Length = 636
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 67 YHIATEPEHITGEWPYIDP 85
YH+ PEH+ G +PY P
Sbjct: 535 YHVEPHPEHLCGAYPYAYP 553
>AY012155-1|AAG42154.1| 636|Homo sapiens virion-associated
nuclear-shuttling protein protein.
Length = 636
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 67 YHIATEPEHITGEWPYIDP 85
YH+ PEH+ G +PY P
Sbjct: 535 YHVEPHPEHLCGAYPYAYP 553
>AJ011896-1|CAA09856.1| 635|Homo sapiens Naf1 beta protein protein.
Length = 635
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 67 YHIATEPEHITGEWPYIDP 85
YH+ PEH+ G +PY P
Sbjct: 535 YHVEPHPEHLCGAYPYAYP 553
>AJ011895-1|CAA09855.1| 636|Homo sapiens Naf1 alpha protein
protein.
Length = 636
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 67 YHIATEPEHITGEWPYIDP 85
YH+ PEH+ G +PY P
Sbjct: 535 YHVEPHPEHLCGAYPYAYP 553
>AB252982-1|BAF48799.1| 630|Homo sapiens Nef-associated factor 1
SNP protein.
Length = 630
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 67 YHIATEPEHITGEWPYIDP 85
YH+ PEH+ G +PY P
Sbjct: 535 YHVEPHPEHLCGAYPYAYP 553
>AB252973-1|BAF48790.1| 635|Homo sapiens Nef-associated factor 1
isoform 4 protein.
Length = 635
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 67 YHIATEPEHITGEWPYIDP 85
YH+ PEH+ G +PY P
Sbjct: 535 YHVEPHPEHLCGAYPYAYP 553
>AB252972-1|BAF48789.1| 636|Homo sapiens Nef-associated factor 1
isoform 3 protein.
Length = 636
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 67 YHIATEPEHITGEWPYIDP 85
YH+ PEH+ G +PY P
Sbjct: 535 YHVEPHPEHLCGAYPYAYP 553
>AB252971-1|BAF48788.1| 635|Homo sapiens Nef-associated factor 1
isoform 2 protein.
Length = 635
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 67 YHIATEPEHITGEWPYIDP 85
YH+ PEH+ G +PY P
Sbjct: 535 YHVEPHPEHLCGAYPYAYP 553
>AB252970-1|BAF48787.1| 636|Homo sapiens Nef-associated factor 1
isoform 1 protein.
Length = 636
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 67 YHIATEPEHITGEWPYIDP 85
YH+ PEH+ G +PY P
Sbjct: 535 YHVEPHPEHLCGAYPYAYP 553
>AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.
Length = 1183
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 43 PPMPSKKSIRLAQGLGGLCWWWI-LYHIATEPEHITGEWPYIDPSTWTDEE 92
P S+K +R G G C WI + + +P + +W +P W ++
Sbjct: 401 PEPKSRKQVRKFLGAAGFCRLWIPNFAVLAKPLYEVTKWGDREPFEWGSQQ 451
>AF141344-1|AAG49447.1| 119|Homo sapiens LYST-interacting protein
LIP8 protein.
Length = 119
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 43 PPMPSKKSIRLAQGLGGLC--WWWILYHIATEP 73
PP P +S R +G GLC W W IA EP
Sbjct: 67 PPAPGLRSPRRRRGGXGLCLPWPWPEACIAAEP 99
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.318 0.138 0.500
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,382,247
Number of Sequences: 224733
Number of extensions: 775799
Number of successful extensions: 1550
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1529
Number of HSP's gapped (non-prelim): 24
length of query: 105
length of database: 73,234,838
effective HSP length: 79
effective length of query: 26
effective length of database: 55,480,931
effective search space: 1442504206
effective search space used: 1442504206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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