GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002455-TA|BGIBMGA002455-PA|undefined
         (105 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical pr...    46   7e-06
AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquino...    46   7e-06
U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related...    26   4.5  
Z49207-6|CAJ58500.1|  348|Caenorhabditis elegans Hypothetical pr...    25   7.9  
Z49207-5|CAA89070.1|  402|Caenorhabditis elegans Hypothetical pr...    25   7.9  

>Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical
           protein F44G4.2 protein.
          Length = 160

 Score = 45.6 bits (103), Expect = 7e-06
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 4/46 (8%)

Query: 57  LGGLCWWWILYHIATEPEHITGEW--PYIDPSTWTDEELGIPPDSA 100
           +  + W W  YH+     H+ G W  PY+  S +TDEELGIP DSA
Sbjct: 100 ISAVIWAWFSYHMYYHSGHLLGHWYMPYL--SEFTDEELGIPKDSA 143


>AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquinone
           oxidoreductaseAGGG subunit protein.
          Length = 160

 Score = 45.6 bits (103), Expect = 7e-06
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 4/46 (8%)

Query: 57  LGGLCWWWILYHIATEPEHITGEW--PYIDPSTWTDEELGIPPDSA 100
           +  + W W  YH+     H+ G W  PY+  S +TDEELGIP DSA
Sbjct: 100 ISAVIWAWFSYHMYYHSGHLLGHWYMPYL--SEFTDEELGIPKDSA 143


>U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related
           family protein 2 protein.
          Length = 933

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 3/21 (14%)

Query: 63  WWILYHIATEPE---HITGEW 80
           W+++YH+   PE   +I+GEW
Sbjct: 206 WFMIYHLKFHPEEMSYISGEW 226


>Z49207-6|CAJ58500.1|  348|Caenorhabditis elegans Hypothetical
          protein R07E3.1b protein.
          Length = 348

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 74 EHITGEWPYIDPSTWTDEE 92
          EH + E+ + D S WTDEE
Sbjct: 75 EHGSAEYGHNDMSDWTDEE 93


>Z49207-5|CAA89070.1|  402|Caenorhabditis elegans Hypothetical
           protein R07E3.1a protein.
          Length = 402

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 74  EHITGEWPYIDPSTWTDEE 92
           EH + E+ + D S WTDEE
Sbjct: 129 EHGSAEYGHNDMSDWTDEE 147


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.138    0.500 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,211
Number of Sequences: 27539
Number of extensions: 101398
Number of successful extensions: 184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 180
Number of HSP's gapped (non-prelim): 5
length of query: 105
length of database: 12,573,161
effective HSP length: 71
effective length of query: 34
effective length of database: 10,617,892
effective search space: 361008328
effective search space used: 361008328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)