GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002454-TA|BGIBMGA002454-PA|undefined
         (65 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    23   3.8  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    23   3.8  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    23   5.0  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    23   5.0  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    23   6.6  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    22   8.7  

>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 34  DTVKLDNIPFNDHAILEDGTEAPRPCCQDKT 64
           +TVKL+ IP+N      +  EA  P  +  T
Sbjct: 685 ETVKLEEIPYNKFFKTVEKNEAYNPSSKSAT 715


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 19  AREIKPGVY-EARITDDTVKLDNIPFNDHA 47
           A ++K G   +  I  ++ ++DNI FND A
Sbjct: 554 ADDMKDGTNNDVEIEKNSTEIDNITFNDEA 583


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 394

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 20 REIKPGVYEARITDDTVKLDNIPFNDHAILEDG 52
          R+ + G YE  I +  VK++N   N   ++E+G
Sbjct: 54 RDRESGYYEKAIRNGQVKVNNQIGNVDTLIENG 86


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 10  RELRTQVIQAREIKPGVYEARITDDTVKLDNIPFNDHAIL 49
           +E R Q I  +  K G+Y  +   D  KLD   F   A++
Sbjct: 229 KEPRLQTIYLKTNKRGLYTLKHVVDKSKLDVRIFRSEAVV 268


>SPCC70.05c |||serine/threonine protein kinase
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 781

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 10/50 (20%), Positives = 22/50 (44%)

Query: 8  IERELRTQVIQAREIKPGVYEARITDDTVKLDNIPFNDHAILEDGTEAPR 57
          + R+  +Q+    + K   +E R+   T  + ++P N+  +       PR
Sbjct: 48 LSRKNSSQIKSPSDYKSSAHEQRVNHTTDSMAHVPGNNSPLQTPQKSPPR 97


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 45  DHAILEDGTEAPRPC 59
           D  +LEDGT  P  C
Sbjct: 152 DSIVLEDGTAIPASC 166


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.138    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 296,542
Number of Sequences: 5004
Number of extensions: 9432
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 6
length of query: 65
length of database: 2,362,478
effective HSP length: 45
effective length of query: 20
effective length of database: 2,137,298
effective search space: 42745960
effective search space used: 42745960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)