GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002454-TA|BGIBMGA002454-PA|undefined
         (65 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421...    27   1.9  
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998...    27   1.9  
10_08_0859 + 21132932-21133069,21133200-21133286,21133373-21133552     25   5.8  
01_05_0302 + 20637139-20637291,20637390-20637476,20637609-206378...    25   5.8  
11_06_0720 - 26617665-26617781,26617851-26617924,26618218-266183...    25   7.6  
08_01_1014 - 10262705-10262719,10263545-10264288                       25   7.6  

>05_05_0034 - 21741148-21741275,21741890-21741928,21742007-21742121,
            21742227-21742292,21743213-21743371,21743573-21743609,
            21743757-21744194,21744735-21744817,21744920-21744956,
            21745146-21745214,21745316-21745407,21745481-21745565,
            21745903-21745982,21746327-21746724,21746813-21747717,
            21747825-21747915,21748617-21750680,21750681-21750749,
            21750850-21751273,21751644-21751763
          Length = 1832

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 49   LEDGTEAPRPCCQDKTK 65
            L+D  EAP+PCC  +T+
Sbjct: 1673 LKDTREAPKPCCNPQTE 1689


>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
            21699927-21699992,21701064-21701203,21701424-21701473,
            21701608-21702045,21702757-21702839,21702941-21702977,
            21703366-21703457,21703531-21703615,21703950-21704029,
            21704049-21704105,21704350-21704747,21706322-21707223,
            21707331-21707421,21708123-21710273,21710375-21710813,
            21711180-21711299
          Length = 1836

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 49   LEDGTEAPRPCCQDKTK 65
            L+D  EAP+PCC  +T+
Sbjct: 1677 LKDTREAPKPCCNPQTE 1693


>10_08_0859 +
          21132932-21133069,21133200-21133286,21133373-21133552
          Length = 134

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 41 IPFNDHAILEDGTEAPRPC 59
          +P ND  + ++GT  P PC
Sbjct: 47 LPTNDELVWDNGTPFPEPC 65


>01_05_0302 +
          20637139-20637291,20637390-20637476,20637609-20637836,
          20638014-20638184,20638843-20638896,20639028-20639174,
          20639326-20639706
          Length = 406

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 34 DTVKLDNIPFNDHAILEDGTEAPRPCCQ 61
          D V + N P  DH +L+D T   RP  Q
Sbjct: 59 DCVHISNQPAFDHPLLKDHTIQMRPSIQ 86


>11_06_0720 -
           26617665-26617781,26617851-26617924,26618218-26618331,
           26619375-26619399,26619564-26619620,26620273-26622888
          Length = 1000

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 26  VYEARITDDTVKLDNIPFNDHAILEDGTEA 55
           V+++  T D V   N+    +A+LEDGT+A
Sbjct: 404 VFQSMPTHDIVSY-NVLIGGYAVLEDGTKA 432


>08_01_1014 - 10262705-10262719,10263545-10264288
          Length = 252

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)

Query: 44  NDHAILEDGTEAPRPC-CQDKT 64
           +DH I   G +A +PC C D+T
Sbjct: 134 DDHLISRHGEKARKPCNCSDRT 155


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.138    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,646
Number of Sequences: 37544
Number of extensions: 57720
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 6
length of query: 65
length of database: 14,793,348
effective HSP length: 45
effective length of query: 20
effective length of database: 13,103,868
effective search space: 262077360
effective search space used: 262077360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)