GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002454-TA|BGIBMGA002454-PA|undefined
         (65 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20459| Best HMM Match : 7tm_2 (HMM E-Value=0.00021)                 27   2.8  
SB_17670| Best HMM Match : RVT_1 (HMM E-Value=6.1e-25)                 27   2.8  
SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.8  
SB_29451| Best HMM Match : K_tetra (HMM E-Value=1.1)                   26   3.7  
SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               25   8.6  
SB_17508| Best HMM Match : Herpes_gE (HMM E-Value=8.5)                 25   8.6  

>SB_20459| Best HMM Match : 7tm_2 (HMM E-Value=0.00021)
          Length = 397

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 29  ARITDDTVKL--DNIPFNDHAILEDGTEA 55
           AR  +D+V    D++PFN   +L +G EA
Sbjct: 285 ARFIEDSVPFNEDSVPFNHEEVLSNGKEA 313


>SB_17670| Best HMM Match : RVT_1 (HMM E-Value=6.1e-25)
          Length = 1271

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/17 (58%), Positives = 15/17 (88%)

Query: 7   DIERELRTQVIQAREIK 23
           DI+RE++TQ+IQA  I+
Sbjct: 129 DIDREIKTQIIQAASIE 145


>SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1127

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 29   ARITDDTVKL--DNIPFNDHAILEDGTEA 55
            AR  +D+V    D++PFN   +L +G EA
Sbjct: 1022 ARFIEDSVPFNEDSVPFNHEEVLSNGKEA 1050


>SB_29451| Best HMM Match : K_tetra (HMM E-Value=1.1)
          Length = 607

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 12  LRTQVIQAREIKPGVYEARITDDTVKLDNIPFNDHAILEDGTEAP 56
           L +Q+   R+   G+Y+AR+ D T  L      + A LE G   P
Sbjct: 368 LESQLEHLRQDVRGIYDARLGDSTATLRRFEMAERA-LESGYAFP 411


>SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1829

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 42  PFNDHAILEDGTEAPRPCCQDKTK 65
           PF  HA++E G   P    +DKT+
Sbjct: 163 PFVAHALVEPGLPRPSDAPEDKTR 186


>SB_17508| Best HMM Match : Herpes_gE (HMM E-Value=8.5)
          Length = 394

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 42  PFNDHAILEDGTEAPRPCCQDKTK 65
           PF  HA++E G   P    +DKT+
Sbjct: 237 PFVAHALVEPGLPRPSDAPEDKTR 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.138    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,337
Number of Sequences: 59808
Number of extensions: 78793
Number of successful extensions: 194
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 6
length of query: 65
length of database: 16,821,457
effective HSP length: 44
effective length of query: 21
effective length of database: 14,189,905
effective search space: 297988005
effective search space used: 297988005
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)