GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002454-TA|BGIBMGA002454-PA|undefined
         (65 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U72849-1|AAD00186.1| 2033|Homo sapiens envoplakin protein.             28   5.5  
U53786-1|AAC64662.1| 2033|Homo sapiens envoplakin protein.             28   5.5  
BC126105-1|AAI26106.1| 2033|Homo sapiens envoplakin protein.           28   5.5  
BC126103-1|AAI26104.1| 2033|Homo sapiens envoplakin protein.           28   5.5  

>U72849-1|AAD00186.1| 2033|Homo sapiens envoplakin protein.
          Length = 2033

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 9/62 (14%)

Query: 8    IERELRTQVIQAREIK---PGVYEARITDDTVKLDNIPFNDHAILEDGTEAPR-PCCQDK 63
            +ERELR   ++ +E++   P V E  I ++ VKL+  P      LE  TEA R    Q+K
Sbjct: 1435 VERELRQLTLRIQELEKRPPTVQEKIIMEEVVKLEKDP-----DLEKSTEALRWDLDQEK 1489

Query: 64   TK 65
            T+
Sbjct: 1490 TQ 1491


>U53786-1|AAC64662.1| 2033|Homo sapiens envoplakin protein.
          Length = 2033

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 9/62 (14%)

Query: 8    IERELRTQVIQAREIK---PGVYEARITDDTVKLDNIPFNDHAILEDGTEAPR-PCCQDK 63
            +ERELR   ++ +E++   P V E  I ++ VKL+  P      LE  TEA R    Q+K
Sbjct: 1435 VERELRQLTLRIQELEKRPPTVQEKIIMEEVVKLEKDP-----DLEKSTEALRWDLDQEK 1489

Query: 64   TK 65
            T+
Sbjct: 1490 TQ 1491


>BC126105-1|AAI26106.1| 2033|Homo sapiens envoplakin protein.
          Length = 2033

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 9/62 (14%)

Query: 8    IERELRTQVIQAREIK---PGVYEARITDDTVKLDNIPFNDHAILEDGTEAPR-PCCQDK 63
            +ERELR   ++ +E++   P V E  I ++ VKL+  P      LE  TEA R    Q+K
Sbjct: 1435 VERELRQLTLRIQELEKRPPTVQEKIIMEEVVKLEKDP-----DLEKSTEALRWDLDQEK 1489

Query: 64   TK 65
            T+
Sbjct: 1490 TQ 1491


>BC126103-1|AAI26104.1| 2033|Homo sapiens envoplakin protein.
          Length = 2033

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 9/62 (14%)

Query: 8    IERELRTQVIQAREIK---PGVYEARITDDTVKLDNIPFNDHAILEDGTEAPR-PCCQDK 63
            +ERELR   ++ +E++   P V E  I ++ VKL+  P      LE  TEA R    Q+K
Sbjct: 1435 VERELRQLTLRIQELEKRPPTVQEKIIMEEVVKLEKDP-----DLEKSTEALRWDLDQEK 1489

Query: 64   TK 65
            T+
Sbjct: 1490 TQ 1491


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.318    0.138    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,293,072
Number of Sequences: 224733
Number of extensions: 290192
Number of successful extensions: 418
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 4
length of query: 65
length of database: 73,234,838
effective HSP length: 44
effective length of query: 21
effective length of database: 63,346,586
effective search space: 1330278306
effective search space used: 1330278306
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)