GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002453-TA|BGIBMGA002453-PA|undefined
         (62 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   2.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   2.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   2.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   2.2  
AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochr...    20   2.2  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    19   5.1  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    19   5.1  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    18   6.8  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 2.2
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 3/25 (12%)

Query: 4   YTSFPVGLFFFFNQPKYFEEWVTNT 28
           YT  P G   F+NQ +    WV +T
Sbjct: 863 YTHAPEGFNEFYNQRR---RWVPST 884


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 2.2
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 3/25 (12%)

Query: 4   YTSFPVGLFFFFNQPKYFEEWVTNT 28
           YT  P G   F+NQ +    WV +T
Sbjct: 863 YTHAPEGFNEFYNQRR---RWVPST 884


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 2.2
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 3/25 (12%)

Query: 4   YTSFPVGLFFFFNQPKYFEEWVTNT 28
           YT  P G   F+NQ +    WV +T
Sbjct: 863 YTHAPEGFNEFYNQRR---RWVPST 884


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 2.2
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 3/25 (12%)

Query: 4   YTSFPVGLFFFFNQPKYFEEWVTNT 28
           YT  P G   F+NQ +    WV +T
Sbjct: 863 YTHAPEGFNEFYNQRR---RWVPST 884


>AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 126

 Score = 19.8 bits (39), Expect = 2.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 5   TSFPVGLFFFFNQPKYF 21
           T+  +G F     PKYF
Sbjct: 86  TTVGIGQFLVHRNPKYF 102


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 18.6 bits (36), Expect = 5.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 18  PKYFEEWVT 26
           PK F+EW T
Sbjct: 99  PKLFKEWGT 107


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 18.6 bits (36), Expect = 5.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 30  RQIFPPENQHDREAIQKLIQD 50
           RQ+FP E ++  E I  ++ +
Sbjct: 289 RQVFPNEKKNISEFINVVLNN 309


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 18.2 bits (35), Expect = 6.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)

Query: 40  DREAIQKLIQDMRK 53
           D+E   KL+Q+M++
Sbjct: 152 DKENFVKLLQEMKQ 165


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,684
Number of Sequences: 317
Number of extensions: 560
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 62
length of database: 114,650
effective HSP length: 42
effective length of query: 20
effective length of database: 101,336
effective search space:  2026720
effective search space used:  2026720
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.7 bits)
S2: 34 (17.8 bits)