GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002453-TA|BGIBMGA002453-PA|undefined
         (62 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    27   0.22 
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    24   2.1  
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|...    23   3.6  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    23   4.8  
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces...    23   4.8  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    23   4.8  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    23   6.3  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    22   8.3  
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos...    22   8.3  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    22   8.3  

>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 27.5 bits (58), Expect = 0.22
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 23  EWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQM 56
           +++   + ++FP   Q D E I +L  DMR++ +
Sbjct: 729 KYIHFAREKVFPRLQQMDEEKISRLYSDMRRESL 762


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 4   YTSFPVGLFFFFNQPKYFEEWVTNTKRQIFPP 35
           YT FPV +  + NQP   E     T  QI  P
Sbjct: 422 YTLFPVPVDVYDNQPNNPESLAQTTLLQISTP 453


>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 10  GLFFFFNQPKYFEEWV 25
           GLF + + P YF EW+
Sbjct: 210 GLFQYVSCPNYFCEWI 225


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38  QHDREAIQKLIQDMRKKQMQSLES 61
           Q   E +  +IQDM KKQ    +S
Sbjct: 960 QRTNEVLLPVIQDMHKKQFVGTQS 983


>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 11  LFFFFNQPKYFEEWVTNTKRQIFPPENQHDREAIQKLI 48
           ++F + Q K     V        PP+N  D E ++ LI
Sbjct: 105 MYFIWGQDKKGRAIVFLNLHNFIPPKNTKDMEELKALI 142


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 8/27 (29%), Positives = 18/27 (66%)

Query: 36  ENQHDREAIQKLIQDMRKKQMQSLESK 62
           ++ +  E + KL++D+RKK  +  E++
Sbjct: 562 DDDNYNEELDKLVEDVRKKLQEKEEAE 588


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 38  QHDREAIQKLIQDMRKKQMQSLE 60
           QHD +   +++QD  +K+M+  E
Sbjct: 309 QHDIQEFNRVLQDNLEKKMKGTE 331


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 1155

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 1  MAMYTSFPVGLFFFFNQPKYF 21
          MA+Y+SF + L+F F    YF
Sbjct: 1  MAIYSSFWIRLYFTFRFFCYF 21


>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 13  FFFNQPKYFEEWVTNTKR 30
           FF + PK FE W+++  R
Sbjct: 137 FFNSMPKEFEVWMSHGDR 154


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 7/41 (17%)

Query: 22  EEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLESK 62
           EEWV + + +    E   +       I++ R+KQM+S+ S+
Sbjct: 471 EEWVNSKEEEDLITETAQE-------IEEQRQKQMESVRSQ 504


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 300,469
Number of Sequences: 5004
Number of extensions: 9842
Number of successful extensions: 49
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 10
length of query: 62
length of database: 2,362,478
effective HSP length: 43
effective length of query: 19
effective length of database: 2,147,306
effective search space: 40798814
effective search space used: 40798814
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 45 (22.2 bits)