GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002453-TA|BGIBMGA002453-PA|undefined
         (62 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0391 + 22576839-22577387                                         27   1.4  
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440...    26   3.3  
11_06_0028 - 19393700-19393899,19394058-19394116,19394437-193945...    25   5.8  
08_01_0505 - 4379722-4380795,4380868-4381008,4381099-4381270,438...    25   5.8  
07_01_0252 + 1883709-1885306,1886338-1886466,1887319-1887341,188...    25   5.8  
09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,243...    25   7.7  
04_01_0003 + 79564-79698,79879-79956,81025-81388,82399-82437,825...    25   7.7  

>02_04_0391 + 22576839-22577387
          Length = 182

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 15 FNQPKYFEEWVTNTKRQIFPPENQHDREAI 44
          FN+ K+ E   TN   Q+  P N+H+++ +
Sbjct: 47 FNKQKHVEIQPTNKLEQLIQPTNEHEQQQL 76


>09_04_0684 -
           19442335-19442990,19443774-19443839,19443935-19444032,
           19444787-19445157
          Length = 396

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 18  PKYFEEWVTNTKR-QIFPPENQHDREAIQKLIQDMRKKQMQSLESK 62
           PKY EEWV N  R       N   R   +    + R++ MQ+ +++
Sbjct: 192 PKYHEEWVRNNARANERSRRNDRPRNFDRSRNFERRRENMQNFQNR 237


>11_06_0028 -
           19393700-19393899,19394058-19394116,19394437-19394521,
           19395305-19395474,19397534-19397613,19398288-19398392,
           19399268-19399308,19399400-19399438,19400473-19400818,
           19401762-19401815,19402249-19402350
          Length = 426

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 13  FFFNQPKYFEEWVTNTKRQIFPPENQHDREAIQK-LIQDMRKKQMQSLESK 62
           F FN+  + +EWVTN +      EN   ++ ++K  + D   K  +S + K
Sbjct: 113 FIFNEYSW-DEWVTNDRLLKLTDENIRKQQELEKSQVVDKSVKSGRSAQHK 162


>08_01_0505 -
          4379722-4380795,4380868-4381008,4381099-4381270,
          4381944-4382047,4382127-4382259,4384477-4384653,
          4385164-4385309,4385536-4385625,4385703-4385915,
          4386090-4386182,4386743-4386937,4387018-4387110,
          4387924-4388019,4388556-4388985,4389424-4390091,
          4392074-4392271,4392690-4393407,4394036-4394181
          Length = 1628

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 6  SFPVGLFFFFNQPKYFEEWVTNTKRQIF 33
          +F +GL+   N     +EWV  TKR  F
Sbjct: 65 AFRLGLYGNLNVQSSVQEWVDETKRLFF 92


>07_01_0252 +
           1883709-1885306,1886338-1886466,1887319-1887341,
           1887455-1888023
          Length = 772

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 4/30 (13%)

Query: 22  EEWVTNTKRQIFPPENQHDREAIQKLIQDM 51
           EEW+TNT  +I    + +D+E+I ++I  +
Sbjct: 619 EEWMTNTLNRI----DMNDKESISRIIDPL 644


>09_01_0165 -
           2436769-2437442,2438159-2438224,2438318-2438415,
           2439856-2440214
          Length = 398

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)

Query: 18  PKYFEEWVTNTKR 30
           PKY EEWV N  R
Sbjct: 188 PKYHEEWVRNNAR 200


>04_01_0003 +
           79564-79698,79879-79956,81025-81388,82399-82437,
           82561-82601,83258-83362,83914-83919,84044-84123,
           86744-86913,87664-87748,88067-88125,88451-88464
          Length = 391

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 11  LFFFFNQPKYFEEWVTNTKRQIFPPENQHDREAIQK 46
           + F FN+  + +EWVTN +      EN   ++ ++K
Sbjct: 136 IVFIFNEYSW-DEWVTNDRLLKLTDENIRKQQELEK 170


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,694,939
Number of Sequences: 37544
Number of extensions: 47371
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 7
length of query: 62
length of database: 14,793,348
effective HSP length: 42
effective length of query: 20
effective length of database: 13,216,500
effective search space: 264330000
effective search space used: 264330000
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 52 (25.0 bits)