GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002453-TA|BGIBMGA002453-PA|undefined
         (62 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132949-12|CAB70105.1|   90|Caenorhabditis elegans Hypothetical...    32   0.058
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p...    30   0.23 
Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical pr...    28   0.71 
Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical pr...    28   0.71 
Z74038-2|CAE48502.1|  611|Caenorhabditis elegans Hypothetical pr...    28   0.71 
Z50872-2|CAA90755.1|  273|Caenorhabditis elegans Hypothetical pr...    27   1.2  
AF026215-6|AAB71325.1|  516|Caenorhabditis elegans Hypothetical ...    27   1.6  
Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    27   2.2  
Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical pr...    25   8.8  

>AL132949-12|CAB70105.1|   90|Caenorhabditis elegans Hypothetical
          protein Y53F4B.14 protein.
          Length = 90

 Score = 31.9 bits (69), Expect = 0.058
 Identities = 15/53 (28%), Positives = 30/53 (56%)

Query: 6  SFPVGLFFFFNQPKYFEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQS 58
          +FPVG F+ FNQP  F+E++   +       ++   E  ++L+   RK++ ++
Sbjct: 16 TFPVGAFWLFNQPTIFKEFMRGYRIPDSSAGDKAMAEFKEQLLATKRKEEYEN 68


>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
           protein C52B9.8 protein.
          Length = 1336

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 13/44 (29%), Positives = 26/44 (59%)

Query: 19  KYFEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLESK 62
           K  ++++TN  ++I   E ++++  IQKLIQ+  +     L+ K
Sbjct: 218 KSMQQYITNENKRIAREEMKNEKNRIQKLIQEDEEGYRAMLDEK 261


>Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical
           protein H40L08.3 protein.
          Length = 1026

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 10/48 (20%), Positives = 25/48 (52%)

Query: 15  FNQPKYFEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLESK 62
           FN+ +  ++   +  + ++  E+ H +   + +I+D  +K  + LE K
Sbjct: 747 FNESEAIKQRTISNLKGLYEDESTHQKRKYETMIEDQIRKSFRQLEEK 794


>Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical
           protein H40L08.3 protein.
          Length = 1026

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 10/48 (20%), Positives = 25/48 (52%)

Query: 15  FNQPKYFEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLESK 62
           FN+ +  ++   +  + ++  E+ H +   + +I+D  +K  + LE K
Sbjct: 747 FNESEAIKQRTISNLKGLYEDESTHQKRKYETMIEDQIRKSFRQLEEK 794


>Z74038-2|CAE48502.1|  611|Caenorhabditis elegans Hypothetical
           protein F58B4.1b protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 8   PVGLFFFFNQPKYFEEWVTNTKRQIFPPENQHDRE 42
           P G  FF N    F  W TN  +  +P  N ++ +
Sbjct: 571 PFGSNFFNNNYNSFNNWYTNKNKNYYPYSNSNNNK 605


>Z50872-2|CAA90755.1|  273|Caenorhabditis elegans Hypothetical
           protein C05D12.4 protein.
          Length = 273

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 1   MAMYTSFPVGLFFFFNQPKYFEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQ-MQSL 59
           + M T++ +  F F +     E WVTN K  +   +++   E ++K    ++ KQ  Q L
Sbjct: 196 LKMQTNW-IDTFLFEHSKMISEVWVTNQKMAVQSKQSEDQLEVLKKKKDVLKAKQAAQEL 254

Query: 60  E 60
           E
Sbjct: 255 E 255


>AF026215-6|AAB71325.1|  516|Caenorhabditis elegans Hypothetical
           protein F09G2.8 protein.
          Length = 516

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 22  EEWVTNTKRQIFPPENQHDREAIQKLIQDMRK 53
           E +++++     P   +HD  AIQK+++D RK
Sbjct: 327 EYFISSSPGPFNPKGREHDLAAIQKIMKDARK 358


>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 34  PPENQHDREAIQKLIQDMRKKQMQS 58
           PP N  D +  Q  ++++R+K++QS
Sbjct: 454 PPANAGDPQVQQNCVEELRRKRLQS 478


>Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical
           protein F53A2.1 protein.
          Length = 859

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 30  RQIFPPENQHDREAIQKLIQDMRKKQMQSLE 60
           R++   E++ D E  QKL Q  + +++QS E
Sbjct: 347 RELADGEDEDDEELKQKLSQKKKMRKIQSAE 377


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,611,744
Number of Sequences: 27539
Number of extensions: 51107
Number of successful extensions: 242
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 9
length of query: 62
length of database: 12,573,161
effective HSP length: 42
effective length of query: 20
effective length of database: 11,416,523
effective search space: 228330460
effective search space used: 228330460
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 51 (24.6 bits)