GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002453-TA|BGIBMGA002453-PA|undefined
         (62 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    26   0.041
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   0.22 
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    20   2.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    19   4.7  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              19   6.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   6.2  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 0.041
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 6/48 (12%)

Query: 14  FFNQPKYFEE-WVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLE 60
           F N  K+ ++ +V N+K +      +HD   ++ LI D+RKKQ++SLE
Sbjct: 340 FINILKFLKQKYVKNSKLE---KVIKHD--ILRMLIIDLRKKQLKSLE 382


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 0.22
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 19  KYFEEWVTNTKRQIFPPENQHDREAIQKLIQ 49
           K  EE    TK+ + P ENQ   E + K  Q
Sbjct: 535 KETEEEKKKTKQSLSPSENQSKMEILPKTTQ 565



 Score = 18.6 bits (36), Expect = 6.2
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 18  PKYFEEWVT 26
           PK F+EW T
Sbjct: 103 PKLFKEWGT 111


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding
          protein ASP5 protein.
          Length = 143

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 35 PENQHDREAIQKLIQDMRKKQMQSL 59
          P      + ++KL ++MRK  +Q +
Sbjct: 20 PVKSMSADQVEKLAKNMRKSCLQKI 44


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.0 bits (37), Expect = 4.7
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 18  PKYFEEWVTNTKRQIFP 34
           P+   +W+    R +FP
Sbjct: 437 PQEIAQWIDRRSRIVFP 453


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 3  MYTSFPVGLFFFFNQPKYFEEWVTNTKRQIFPPENQ 38
          +Y    +  F F ++   F E V+    +IF  EN+
Sbjct: 61 LYIECAMKKFSFVDKDGNFNEHVSREIAKIFLNENE 96


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 47  LIQDMRKKQMQSLES 61
           L++ M +KQ+  LES
Sbjct: 457 LMRTMNRKQISELES 471


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,166
Number of Sequences: 429
Number of extensions: 694
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 62
length of database: 140,377
effective HSP length: 42
effective length of query: 20
effective length of database: 122,359
effective search space:  2447180
effective search space used:  2447180
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.2 bits)
S2: 35 (18.2 bits)