Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002452-TA|BGIBMGA002452-PA|undefined
(91 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0564 - 4136114-4136566,4136977-4137047,4137197-4137275,413... 27 1.5
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 26 3.4
01_01_0472 - 3473096-3474288,3474833-3474938 26 3.4
11_03_0121 - 10275312-10275568,10277520-10277595,10277854-10277919 26 4.5
08_01_0026 - 189876-190073,190473-190559,190654-190877,190961-19... 26 4.5
01_01_0799 + 6219914-6220051,6220602-6220883 26 4.5
03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153... 25 5.9
02_02_0340 + 9135846-9138377 25 5.9
12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991... 25 7.8
11_06_0461 + 23856949-23857004,23859814-23859886,23860040-23861398 25 7.8
02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243 25 7.8
>02_01_0564 -
4136114-4136566,4136977-4137047,4137197-4137275,
4137380-4137535,4137867-4137938,4138081-4138161,
4138237-4138302,4138482-4138547,4138648-4138698,
4138982-4139109,4139239-4139377,4139606-4139643,
4139679-4139748,4140194-4140277
Length = 517
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 14 NDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHKHKKTEPFNDELHMNTHNMY-ETHF 70
ND + + + N + L + ++ + QH+ + +P + + H + HNMY +TH+
Sbjct: 409 NDPFATSSSFLPPSNVQFAMLNQQQHQYYQSQHQQQYYQPHHFQDHQHHHNMYFQTHY 466
>01_01_0612 +
4565422-4565481,4565597-4565671,4565760-4566332,
4566438-4566551,4566676-4567377
Length = 507
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/59 (20%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 12 IINDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHKHKKTEPFNDELHMNTHNMYETHF 70
I+ + + T +T+ KK++++ A K + GE++ ++++ + + ++ + THF
Sbjct: 27 IVFESFAPSTQRDSTIIKKEEKMEAAKAEMGEVREENERLKTMLTRI-VSDYKSLHTHF 84
>01_01_0472 - 3473096-3474288,3474833-3474938
Length = 432
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 23 LRNTLNKKDKELTAYKTKFGEIQHKHKKTEPFNDELHMNTHNMYETHF 70
+R L + +E + KF +++ + + E +N EL T + E F
Sbjct: 335 IRIKLEEVSEEKLLVENKFKQLEEANSEAEKYNQELSHATEKLSEEKF 382
>11_03_0121 -
10275312-10275568,10277520-10277595,10277854-10277919
Length = 132
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 17 WMSQTILRNTLNKKDKELTAYKTKFGE 43
W+ T +R+ ++ K+ T +K KFGE
Sbjct: 39 WLVLTRIRSVHQQEAKQYTMWKLKFGE 65
>08_01_0026 -
189876-190073,190473-190559,190654-190877,
190961-191261,191369-191467,193465-193602,193691-193879
Length = 411
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 48 HKKTEPFNDELHMNTHNMYETHFGGSAIPSSILQKT 83
H PFN+ + THN Y SA S+++ +T
Sbjct: 63 HGTDLPFNNYSWLTTHNSYALAGSSSATGSALITQT 98
>01_01_0799 + 6219914-6220051,6220602-6220883
Length = 139
Score = 25.8 bits (54), Expect = 4.5
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 3 QKITQNLLKIINDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHKHKKTEPFNDELHMNT 62
Q IT L+ N++ + T T K ++ ++ + + Q+K K+ + D+LH+
Sbjct: 69 QSITIPLISFENNIGLVATAPEPTGGSKS--MSMHQQQKSKNQNKAKQARTYIDQLHLAQ 126
Query: 63 HNMYET 68
N +T
Sbjct: 127 RNSQQT 132
>03_01_0192 -
1534013-1535147,1535249-1535370,1535497-1535556,
1535666-1535764,1535839-1535889,1535974-1536175,
1536709-1536911,1537264-1537350,1537435-1537589,
1537640-1537723,1538121-1538325,1538497-1538724
Length = 876
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 11 KIINDLWMSQTILRNTLNKKDKELTAYKTKFGE 43
K I+ L S T L+N++ D+ L+AYK E
Sbjct: 282 KQIDSLSTSNTELQNSIKDLDERLSAYKQSRAE 314
>02_02_0340 + 9135846-9138377
Length = 843
Score = 25.4 bits (53), Expect = 5.9
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 8 NLLKIINDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHKHKKTEPFNDEL 58
N+ +I DL Q +L + ++DK + E++ K + E DEL
Sbjct: 36 NMEQIKRDLMFMQGLLHHARERRDKSNPGLQGLLEELRKKADEAEDVLDEL 86
>12_01_0978 +
9908001-9908175,9908538-9908619,9910793-9910904,
9911965-9913737
Length = 713
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 20 QTILRNTLNKKDKELTAYKTKFGEIQHKHKKTEPFNDELHM 60
++ LR+ + +EL A K + +++ K +TE +LH+
Sbjct: 391 ESSLRSLVESLKQELEAVKEEHDQLKQKDTETESIVGDLHV 431
>11_06_0461 + 23856949-23857004,23859814-23859886,23860040-23861398
Length = 495
Score = 25.0 bits (52), Expect = 7.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 3 QKITQNLLKIINDLWMSQTILRNTLNKKDKELTAYKTKF 41
Q++TQ L+I+ DL ++L + K + Y+ KF
Sbjct: 319 QQVTQETLEILGDLPALLSLLLVSAFDNTKRFSIYRNKF 357
>02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243
Length = 523
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 55 NDELHMNTHNMYETHFGGSAIPSSIL 80
+DEL + TH FG IP+S+L
Sbjct: 498 DDELRIITHKSQRYSFGERYIPTSVL 523
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.131 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,781
Number of Sequences: 37544
Number of extensions: 86927
Number of successful extensions: 238
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 11
length of query: 91
length of database: 14,793,348
effective HSP length: 69
effective length of query: 22
effective length of database: 12,202,812
effective search space: 268461864
effective search space used: 268461864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)
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