GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002451-TA|BGIBMGA002451-PA|IPR001478|PDZ/DHR/GLGF
         (478 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0776 - 5805555-5805639,5805769-5806008,5806103-5806173,580...    31   2.0  
11_04_0430 + 17653553-17654285,17654305-17654627,17654795-176549...    30   3.5  
04_04_0762 - 27844427-27844542,27844876-27844912,27845436-278458...    30   3.5  
10_08_0174 - 15424277-15424618,15425125-15425633,15426004-154260...    29   8.1  

>06_01_0776 -
           5805555-5805639,5805769-5806008,5806103-5806173,
           5806274-5806627
          Length = 249

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 7/42 (16%)

Query: 89  EESNVGNYECGREQPAQSPGNARRSAGSYQYTSEADESDWET 130
           EES+VG+  CGRE+ A +P ++RR  G      +AD SD E+
Sbjct: 129 EESSVGDSGCGRERSATTP-SSRRPPG------DADSSDAES 163


>11_04_0430 +
           17653553-17654285,17654305-17654627,17654795-17654921,
           17655123-17655338,17655463-17655494
          Length = 476

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)

Query: 153 GDVTITRLAA--GGAAKKDGRLQIGDVLLQVN 182
           G++T T+  A  GG +KK G++++GDV+  VN
Sbjct: 122 GEMTQTKEEAKGGGESKKPGQIKVGDVVFPVN 153


>04_04_0762 -
           27844427-27844542,27844876-27844912,27845436-27845867,
           27846036-27846740
          Length = 429

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 11/29 (37%), Positives = 21/29 (72%)

Query: 163 GGAAKKDGRLQIGDVLLQVNDISVEGASH 191
           GG +KK G++++GDV++ VN    +G ++
Sbjct: 11  GGGSKKPGQIKVGDVVVSVNSEVKKGKNY 39


>10_08_0174 -
           15424277-15424618,15425125-15425633,15426004-15426047,
           15427097-15427100,15427646-15427672,15427885-15428371
          Length = 470

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 113 SAGSYQYTSEADESDWETCDVTLERXXXXXXXXXXXXETDGDVTITRLAAGGAAKK 168
           +AG      E+D+ DWET  VT                 DGDV I  +   G  KK
Sbjct: 301 AAGLVSRLVESDD-DWETAAVTGRHVGPAHRIGSSATVKDGDVYINHIIGFGLGKK 355


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.129    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,506,408
Number of Sequences: 37544
Number of extensions: 336549
Number of successful extensions: 980
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 976
Number of HSP's gapped (non-prelim): 6
length of query: 478
length of database: 14,793,348
effective HSP length: 85
effective length of query: 393
effective length of database: 11,602,108
effective search space: 4559628444
effective search space used: 4559628444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)