GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002451-TA|BGIBMGA002451-PA|IPR001478|PDZ/DHR/GLGF
         (478 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   5.6  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   5.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   5.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   5.6  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 289 VSALRNTGEQVTLVVLPAGSVPPVAKTAPLYSTRTQATSCS 329
           VSAL    E V + V    SVP +     + S ++   S S
Sbjct: 398 VSALAGKSEYVDITVTTDASVPSLVSNVRITSVKSSELSIS 438


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/35 (22%), Positives = 19/35 (54%)

Query: 320 STRTQATSCSTLHELLEEEPSEIPRCVRMVRLVRS 354
           +TRT+      L   +E  P  +P+ ++ ++ +R+
Sbjct: 432 TTRTREQVTEALRRFVEGYPHAVPKYIQRLKAIRA 466


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/35 (22%), Positives = 19/35 (54%)

Query: 320 STRTQATSCSTLHELLEEEPSEIPRCVRMVRLVRS 354
           +TRT+      L   +E  P  +P+ ++ ++ +R+
Sbjct: 347 TTRTREQVTEALRRFVEGYPHAVPKYIQRLKAIRA 381


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/35 (22%), Positives = 19/35 (54%)

Query: 320 STRTQATSCSTLHELLEEEPSEIPRCVRMVRLVRS 354
           +TRT+      L   +E  P  +P+ ++ ++ +R+
Sbjct: 666 TTRTREQVTEALRRFVEGYPHAVPKYIQRLKAIRA 700


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 277 ETSLVGATHAQAVSALRNTGEQVTLVVLPA---GSVPPVAKTAPLYSTRTQATSCSTL 331
           + S  G+T A   + +  TG   TL    A   G   P A  A   +T    T  +T+
Sbjct: 204 DESKAGSTDASTPATVTTTGATTTLPAASATGTGPATPSAVVATSNATAAMTTGTTTI 261


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.129    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,529
Number of Sequences: 429
Number of extensions: 2630
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 5
length of query: 478
length of database: 140,377
effective HSP length: 60
effective length of query: 418
effective length of database: 114,637
effective search space: 47918266
effective search space used: 47918266
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)