GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002450-TA|BGIBMGA002450-PA|IPR001360|Glycoside
hydrolase, family 1
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    29   1.2  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    27   3.7  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   4.9  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    27   4.9  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    27   6.5  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    26   8.6  

>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 303 SEMEFSWSIPSMDHDAQVRMEQDPHWEKPGTDWLSVYPEGF 343
           ++ E  +S+  M ++A  ++  D  W   G DW    PEGF
Sbjct: 130 TDKETIYSLGKMSYNAYQKIPFDGDWLDLGPDWNITPPEGF 170


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 46  IKALGVKYYRLSISWPRLLPNGTSNNISTDGARYYRNLFEELLKANITPIVTLFH 100
           +K LG  Y   + ++  L+ N T     TD A    N+FEE  + N+ P V L++
Sbjct: 879 MKMLG--YIPRASTFAHLINNSTRRG-DTDDATTALNIFEETKRHNVKPSVFLYN 930


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 339  YPEGFRKLLNYVSD-NYGREIPIIVTENGVGDKGQLKD-YDRISYFNKYLYQLL 390
            YP    K    ++D N+G ++P+ +  N  G  G  +D ++ +  +  Y+   L
Sbjct: 1965 YPNSAFKTAQAINDFNHGEQLPLFILANWRGFSGGQRDMFNEVLKYGSYIVDAL 2018


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 8/61 (13%)

Query: 101 WDMPTPFMDLRGWNNPVIVDYFVDYA---RVAFNLYGDIIKT--WTTINEPHQHCYQGYG 155
           W   T F D   + NP +VDY+ D       AF   G +  +  WT +NEP   C    G
Sbjct: 438 WPGFTAFPD---FTNPDVVDYWKDCLINLTYAFGSNGTVPFSGIWTDMNEPSSFCVGSCG 494

Query: 156 A 156
           +
Sbjct: 495 S 495


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 81  RNLFEELLKANITP--IVTLFHWDMPTPFMDLRGWNNPVIVDYFVDYARVAFNLYGDIIK 138
           R++ E  LK  + P  I     W  P P  + +G    V  D  + Y  +  N   +  K
Sbjct: 437 RSITESWLKEGLRPRCITRDLKWGTPVPLEEFKGKVLYVWFDATIGYISITANYTDEWEK 496

Query: 139 TWTTINEPHQHCYQGYGAD 157
            W   N      YQ  G D
Sbjct: 497 WWR--NPEQVKLYQFMGKD 513


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 79  YYRNLFEELLKANITPIVTLFHWDMPTP 106
           Y  NL++ L KA+    V + HWD  +P
Sbjct: 19  YTFNLYDLLYKASENACVIVVHWDKMSP 46


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.140    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,170
Number of Sequences: 5004
Number of extensions: 107933
Number of successful extensions: 216
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 213
Number of HSP's gapped (non-prelim): 6
length of query: 419
length of database: 2,362,478
effective HSP length: 75
effective length of query: 344
effective length of database: 1,987,178
effective search space: 683589232
effective search space used: 683589232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)