GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002449-TA|BGIBMGA002449-PA|IPR005225|Small GTP-binding
protein domain, IPR001806|Ras GTPase, IPR013753|Ras, IPR003577|Ras
small GTPase, Ras type, IPR003579|Ras small GTPase, Rab type,
IPR003578|Ras small GTPase, Rho type, IPR002041|GTP-binding nuclear
protein Ran
         (204 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   3.0  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   5.2  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    21   6.9  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   9.1  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   9.1  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    21   9.1  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 7/18 (38%), Positives = 14/18 (77%)

Query: 36  IYISTIGIDFKQKIINLD 53
           +Y S+I ++  QK++N+D
Sbjct: 227 LYASSIDVEGSQKLLNVD 244


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 182 ELKERDNVVKPSVSETDAS 200
           E K RDN +K  V   DAS
Sbjct: 284 EAKRRDNEIKMFVKIVDAS 302


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
          protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 80 GAMGIILMYDITNLESFNHL 99
          G + ++  ++IT L+  NHL
Sbjct: 64 GVVSVLDDWEITGLDEMNHL 83


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/35 (20%), Positives = 16/35 (45%)

Query: 169 KIREYRETKADAFELKERDNVVKPSVSETDASKCI 203
           +I +Y+      F  + RD +VK  + +   +  +
Sbjct: 120 RIEQYKRENPSIFSWEIRDRLVKEGICDRSTAPSV 154


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 72  TLTTAYYRGAMGIILMYDITNLESFNHLSYWLRNIQE 108
           T T + +R +  +IL   I  +   + +SYWL  + E
Sbjct: 30  TCTRSNFRSSKLLILYNIILQVLFVSFVSYWLYLVLE 66


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 72  TLTTAYYRGAMGIILMYDITNLESFNHLSYWLRNIQE 108
           T T + +R +  +IL   I  +   + +SYWL  + E
Sbjct: 48  TCTRSNFRSSKLLILYNIILQVLFVSFVSYWLYLVLE 84


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.138    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,811
Number of Sequences: 317
Number of extensions: 2004
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 204
length of database: 114,650
effective HSP length: 54
effective length of query: 150
effective length of database: 97,532
effective search space: 14629800
effective search space used: 14629800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)