Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002449-TA|BGIBMGA002449-PA|IPR005225|Small GTP-binding
protein domain, IPR001806|Ras GTPase, IPR013753|Ras, IPR003577|Ras
small GTPase, Ras type, IPR003579|Ras small GTPase, Rab type,
IPR003578|Ras small GTPase, Rho type, IPR002041|GTP-binding nuclear
protein Ran
(204 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 200 1e-52
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 186 2e-48
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 140 1e-34
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 128 4e-31
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 126 2e-30
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 124 9e-30
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 120 2e-28
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 117 1e-27
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 111 5e-26
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 93 3e-20
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 79 5e-16
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 72 7e-14
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 66 3e-12
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 66 5e-12
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 64 2e-11
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 61 1e-10
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 56 3e-09
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 54 2e-08
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 41 1e-04
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 38 0.001
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 27 1.9
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 27 2.6
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 26 3.4
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom... 25 7.8
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 7.8
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 200 bits (488), Expect = 1e-52
Identities = 91/180 (50%), Positives = 135/180 (75%), Gaps = 2/180 (1%)
Query: 10 KLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWDTAVQER 69
KLL++GDS VGK+C++ R+ ++ + +I+TIGIDFK + I LDG IKLQIWDTA QER
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 70
Query: 70 FRTLTTAYYRGAMGIILMYDITNLESFNHLSYWLRNIQEYASPDVIKVLVGNKCDVHENH 129
FRT+TTAYYRGAMGI+L+YD+T+ +SF+++ W N++++AS +V K+L+GNKCD E+
Sbjct: 71 FRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDC-EDQ 129
Query: 130 RAVPKDRGQKIADDFDMPFFEVSCKNNINIEEAFLTLARKIREYRETKADAFELKERDNV 189
R V ++GQ +AD+ + F E S K N+N++EAF TLAR+I++ + + F + +NV
Sbjct: 130 RQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFS-NQANNV 188
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 186 bits (453), Expect = 2e-48
Identities = 82/169 (48%), Positives = 125/169 (73%), Gaps = 1/169 (0%)
Query: 4 DFSATYKLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWD 63
++ +KLL++GDS VGK+C++ R+ D+ Y + YISTIG+DFK + L+G +KLQIWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWD 63
Query: 64 TAVQERFRTLTTAYYRGAMGIILMYDITNLESFNHLSYWLRNIQEYASPDVIKVLVGNKC 123
TA QERFRT+T++YYRGA GII++YD+T+ +SFN++ WL+ I YA V ++LVGNK
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKS 123
Query: 124 DVHENHRAVPKDRGQKIADDFDMPFFEVSCKNNINIEEAFLTLARKIRE 172
D+ + + V ++ AD ++PF E S K++ N+E+AFLT++R+I+E
Sbjct: 124 DMVDK-KVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKE 171
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 140 bits (339), Expect = 1e-34
Identities = 72/194 (37%), Positives = 120/194 (61%), Gaps = 5/194 (2%)
Query: 4 DFSATYKLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWD 63
++ +K +++GDS VGK+ ++ R+ + STIG++F + I LD IK QIWD
Sbjct: 6 EYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWD 65
Query: 64 TAVQERFRTLTTAYYRGAMGIILMYDITNLESFNHLSYWLRNIQEYASPDVIKVLVGNKC 123
TA QER+R +T+AYYRGA+G +++YDIT SF+++ WL+ ++E+A +++ +LVGNK
Sbjct: 66 TAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKT 125
Query: 124 DVHENHRAVPKDRGQKIADDFDMPFFEVSCKNNINIEEAFLTLARKIREYRETKADAFEL 183
D+ + RAV + Q A + ++ F E S + N+EEAF T+ +I ++ L
Sbjct: 126 DL-LHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRS----L 180
Query: 184 KERDNVVKPSVSET 197
+ D+ V P+ +T
Sbjct: 181 EAGDDGVHPTAGQT 194
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 128 bits (310), Expect = 4e-31
Identities = 67/164 (40%), Positives = 100/164 (60%), Gaps = 5/164 (3%)
Query: 10 KLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWDTAVQER 69
K+++LG+S VGKT I+++Y + ++ Y +TIG DF K + +D + LQ+WDTA QER
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQER 69
Query: 70 FRTLTTAYYRGAMGIILMYDITNLESFNHLSYWLRNIQEYASPDVIK----VLVGNKCDV 125
F++L A+YRGA +L+YD+ N +SF L W ASP + +L+GNK DV
Sbjct: 70 FQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDV 129
Query: 126 HENHRAVPKDRGQKIAD-DFDMPFFEVSCKNNINIEEAFLTLAR 168
E R V K + ++P+FE S K IN++EAF T+A+
Sbjct: 130 EEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAK 173
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 126 bits (304), Expect = 2e-30
Identities = 68/196 (34%), Positives = 115/196 (58%), Gaps = 6/196 (3%)
Query: 9 YKLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWDTAVQE 68
+KL+ LG+ +VGKT ++ R+ +++ + Y +TIGIDF K + L+ ++LQ+WDTA QE
Sbjct: 12 FKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 71
Query: 69 RFRTLTTAYYRGAMGIILMYDITNLESFNHLSYWLRNIQEYASPDVIKVLVGNKCDVHEN 128
RFR+L +Y R + I++YDITN SF + W+ +++ DVI VLVGNK D+ +
Sbjct: 72 RFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADK 131
Query: 129 HRAVPKDRGQKIADDFDMPFFEVSCKNNINIEEAFLTLARKIREYRETKADAFELKERDN 188
R V ++ G+K A + + E S K N++ F +A+ + + + ++ D
Sbjct: 132 -RQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQMLPGMENVETQSTQM--IDV 188
Query: 189 VVKPSVSETDASKCIC 204
++P+ +E S C C
Sbjct: 189 SIQPNENE---SSCNC 201
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 124 bits (299), Expect = 9e-30
Identities = 62/162 (38%), Positives = 95/162 (58%), Gaps = 1/162 (0%)
Query: 10 KLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLD-GVPIKLQIWDTAVQE 68
KL++LGDS VGK+ +V R+ +++ D STIG F + + +D +KL+IWDTA QE
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 69 RFRTLTTAYYRGAMGIILMYDITNLESFNHLSYWLRNIQEYASPDVIKVLVGNKCDVHEN 128
R+++L YYR A I++YDIT S W++ +Q A ++ L GNK D+ +
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQE 135
Query: 129 HRAVPKDRGQKIADDFDMPFFEVSCKNNINIEEAFLTLARKI 170
RAV K + A + ++ FFE S K N+ E F +A+K+
Sbjct: 136 RRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKL 177
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 120 bits (288), Expect = 2e-28
Identities = 60/165 (36%), Positives = 94/165 (56%), Gaps = 4/165 (2%)
Query: 10 KLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINL----DGVPIKLQIWDTA 65
K+++ G S GK+C++ R+ ++ D T+GIDF +II++ IKLQIWDTA
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTA 70
Query: 66 VQERFRTLTTAYYRGAMGIILMYDITNLESFNHLSYWLRNIQEYASPDVIKVLVGNKCDV 125
QE+FR++ YYRGA G +L+YD+TN +SF LS WL +I+ A + VL G+K D+
Sbjct: 71 GQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDL 130
Query: 126 HENHRAVPKDRGQKIADDFDMPFFEVSCKNNINIEEAFLTLARKI 170
+ ++ + ++ E S N+EE FL++ I
Sbjct: 131 QNQRQVSTEEAAEFCSEKHISSAHETSSYTGSNVEECFLSVVSTI 175
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 117 bits (282), Expect = 1e-27
Identities = 64/199 (32%), Positives = 109/199 (54%), Gaps = 6/199 (3%)
Query: 10 KLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWDTAVQER 69
K+++LGDS VGKTC+++++ ++++ Y +TIG DF K + +D + LQ+WDTA QER
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 70 FRTLTTAYYRGAMGIILMYDITNLESFNHLSYWLRNIQEYASPDVIK---VLVGNKCDVH 126
F++L A+YRGA +++Y++ N +SF+ + W + S D ++VGN+ D
Sbjct: 70 FQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQIDKD 129
Query: 127 ENHRAVPKDRGQ---KIADDFDMPFFEVSCKNNINIEEAFLTLARKIREYRETKADAFEL 183
+ RAV R K +M FE S K N N+ + F T++R E ++ D
Sbjct: 130 ASKRAVSLHRALDYCKSKHGSNMIHFEASAKENTNVTDLFETVSRLALENESSRDDFVND 189
Query: 184 KERDNVVKPSVSETDASKC 202
++ ++ T + C
Sbjct: 190 FSEPLLLSKPLNNTSSCNC 208
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 111 bits (268), Expect = 5e-26
Identities = 61/178 (34%), Positives = 96/178 (53%), Gaps = 3/178 (1%)
Query: 9 YKLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWDTAVQE 68
YKL+V+GD VGK+ + + + D Y TI +++K +DG L + DTA QE
Sbjct: 9 YKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKC-EIDGEGALLDVLDTAGQE 67
Query: 69 RFRTLTTAYYRGAMGIILMYDITNLESFNHLSYWLRNIQEYASPDVIK-VLVGNKCDVHE 127
+ + Y R G +L+Y+IT+ SF+ +S + + I D VLV NKCD+ E
Sbjct: 68 EYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDL-E 126
Query: 128 NHRAVPKDRGQKIADDFDMPFFEVSCKNNINIEEAFLTLARKIREYRETKADAFELKE 185
R V + G+++A + E S K +N+EEAF +L R IR Y +++ F+ K+
Sbjct: 127 AERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIRRYNKSEEKGFQNKQ 184
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 93.1 bits (221), Expect = 3e-20
Identities = 55/164 (33%), Positives = 92/164 (56%), Gaps = 6/164 (3%)
Query: 8 TYKLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWDTAVQ 67
T+KL+++GD GKT V R+ + YI+T+G++ + + I +WDTA Q
Sbjct: 9 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQ 68
Query: 68 ERFRTLTTAYY-RGAMGIILMYDITNLESFNHLSYWLRNIQEYASPDVIKVLVGNKCDVH 126
E+ L YY +G GII M+D+T+ ++ ++ +W R++ ++ VL GNK DV
Sbjct: 69 EKLGGLRDGYYIQGQCGII-MFDVTSRITYKNVPHWWRDLVRVCE-NIPIVLCGNKVDVK 126
Query: 127 ENHRAVPKDRGQKIADDFDMPFFEVSCKNNINIEEAFLTLARKI 170
E R V K + ++ ++++S K+N N E+ FL LARK+
Sbjct: 127 E--RKV-KAKAITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 79.0 bits (186), Expect = 5e-16
Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 3/164 (1%)
Query: 10 KLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWDTAVQER 69
++ VLG +VGK+ + +Y + + + Y TI F K I G +I DTA Q+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFS-KNIKYKGQEFATEIIDTAGQDE 66
Query: 70 FRTLTTAYYRGAMGIILMYDITNLESFNHLSYWLRNIQEYASPDVIK-VLVGNKCDVHEN 128
+ L + + G G +L+Y IT+ SF + I + + + V+VGNK D+H
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLH-M 125
Query: 129 HRAVPKDRGQKIADDFDMPFFEVSCKNNINIEEAFLTLARKIRE 172
RAV + G+ +A+++ + E S ++N N+ AF + +I +
Sbjct: 126 QRAVTAEEGKALANEWKCAWTEASARHNENVARAFELIISEIEK 169
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 71.7 bits (168), Expect = 7e-14
Identities = 40/176 (22%), Positives = 84/176 (47%), Gaps = 7/176 (3%)
Query: 6 SATYKLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWDTA 65
+ T K+ ++GDS++GKT ++ Y + + T+G++F +K I++ I IWD
Sbjct: 8 NVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLG 67
Query: 66 VQERFRTLTTAYYRGAMGIILMYDITNLESFNHLSYWLRNIQEYASPDVIKVLVGNKCD- 124
Q F + A+ I+ M+D++ + N + W R + + + + +L+G K D
Sbjct: 68 GQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGF-NKTAVPILIGTKYDH 126
Query: 125 ----VHENHRAVPKDRGQKIADDFDMPFFEVSCKNNINIEEAFLTLARKIREYRET 176
E+ + K + ++ A S ++IN+++ F + K+ + + T
Sbjct: 127 FMTFPREDQEEITK-QARRYAKAMKASLVFCSTSHSINVQKIFKIVLAKVFDLKCT 181
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 66.1 bits (154), Expect = 3e-12
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 11/168 (6%)
Query: 10 KLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWDTAVQER 69
K+++LGD GKT +++ + + +Y TI ++ I +DG I+L +WDTA QE
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIF-VDGNSIELSLWDTAGQEE 73
Query: 70 FRTLTTAYYRGAMGIILMYDITNLESF-NHLSYWLRNIQEYASPDVIKVLVGNKCDVH-- 126
+ L + Y I++ + + + +S N ++ WL + P V VLV KCD+
Sbjct: 74 YDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNC-PGVKLVLVALKCDLRGA 132
Query: 127 -----ENHRAVPKDRGQKIADDFD-MPFFEVSCKNNINIEEAFLTLAR 168
++ + + + G A + + + E S K N + EAF AR
Sbjct: 133 DEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAFTEAAR 180
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 65.7 bits (153), Expect = 5e-12
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 14/167 (8%)
Query: 10 KLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKII-NLDGVPIKLQIWDTAVQE 68
KL+V+GD GKTC++ + + + Y+ T+ ++ I + I+L +WDTA QE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 69 RFRTLTTAYYRGAMGIILMYDITNLESFNHLS-YWLRNIQEYASPDVIKVLVGNKCDVHE 127
+ L Y + I+L + I S N+++ W +Q + P VLVG K D+ +
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFC-PRTPIVLVGLKADLRK 134
Query: 128 NHRA-----------VPKDRGQKIADDFDMPFFEVSCKNNINIEEAF 163
+ A V + Q +A + P+ E S K N + E F
Sbjct: 135 DRNATEVLRTQGLTPVTYQQAQSVALSMNAPYVECSAKENTGVNEVF 181
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 63.7 bits (148), Expect = 2e-11
Identities = 43/172 (25%), Positives = 85/172 (49%), Gaps = 15/172 (8%)
Query: 10 KLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWDTAVQER 69
KL+++GD GKTC++ + + ++Y+ T+ ++ + +DG I+L +WDTA QE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADV-EVDGRHIELALWDTAGQED 66
Query: 70 FRTLTTAYYRGAMGIILMYDITNLESFNHL-SYWLRNIQEYASPDVIKVLVGNKCDVHEN 128
+ L Y + +++ + + ES +++ W+ + + S ++ +LVG K D+ +
Sbjct: 67 YDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCS-NLPILLVGCKVDLRND 125
Query: 129 HRAVPK-----------DRGQKIADDFD-MPFFEVSCKNNINIEEAFLTLAR 168
+ + + + GQ +A + E S K N + E F T AR
Sbjct: 126 PKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFETAAR 177
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 60.9 bits (141), Expect = 1e-10
Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 15/172 (8%)
Query: 10 KLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWDTAVQER 69
KL+++GD GKTC++ + + ++Y+ T+ ++ + +DG ++L +WDTA QE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADV-EVDGRHVELALWDTAGQED 66
Query: 70 FRTLTTAYYRGAMGIILMYDITNLESFNHL-SYWLRNIQEYASPDVIKVLVGNKCDVHE- 127
+ L Y + I++ + + + +S +++ W+ + + S I +LV K D+
Sbjct: 67 YDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPI-LLVACKADLRND 125
Query: 128 ----------NHRAVPKDRGQKIADDFD-MPFFEVSCKNNINIEEAFLTLAR 168
N V + GQ +A + E S K N + E F + R
Sbjct: 126 PKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFESATR 177
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 56.4 bits (130), Expect = 3e-09
Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Query: 10 KLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWDTAVQER 69
KL+V+GD GKT ++ + + Y+ T+ ++ +DG ++L +WDTA QE
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDC-RVDGKSVQLALWDTAGQEE 68
Query: 70 FRTLTTAYYRGAMGIILMYDITNLESFNHLS-YWLRNIQEYASPDVIKVLVGNKCDVHEN 128
+ L Y A I++ + I + +S ++S W+ I P+V +LVG K D+ +
Sbjct: 69 YERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLC-PNVPFILVGMKADLRSD 127
Query: 129 HRAVPKDR 136
A+ + R
Sbjct: 128 PVAIEEMR 135
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 53.6 bits (123), Expect = 2e-08
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 8 TYKLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWDTAVQ 67
T K +V+GD VGKTC++ Y ++ Y+ T+ D + + P L ++DTA Q
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTV-FDNYAVTVMIGDEPYTLGLFDTAGQ 61
Query: 68 ERFRTLTTAYYRGAMGIILMYDITNLESFNHL-SYWLRNIQEYASPDVIKVLVGNKCDVH 126
E + L Y ++ + +T+ SF ++ W + + P V ++VG + D+
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHC-PGVPCLIVGTQIDLR 120
Query: 127 EN 128
++
Sbjct: 121 DD 122
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 41.1 bits (92), Expect = 1e-04
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 10 KLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWDTAVQER 69
++L+LG GKT I+++ + + I T+G F + + IK +WD Q++
Sbjct: 23 RILMLGLDAAGKTTILYKLKLNQSV-VTIPTVG--FNVETVTYKN--IKFNVWDVGGQDK 77
Query: 70 FRTLTTAYYRGAMGIILMYDITNLESFNHLSYWL-RNIQEYASPDVIKVLVGNKCDV 125
R L Y+ G G+I + D + + L R I + D + +++ NK D+
Sbjct: 78 IRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDL 134
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 37.9 bits (84), Expect = 0.001
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 10 KLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWDTAVQER 69
++L++G GKT I+++ + +I + I F + + I +WD Q++
Sbjct: 19 RILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYRN--ISFTVWDVGGQDK 73
Query: 70 FRTLTTAYYRGAMGIILMYDITNLESFNHLSYWL-RNIQEYASPDVIKVLVGNKCDV 125
R L Y++ GII + D + E + L R + E D + ++ NK D+
Sbjct: 74 IRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDL 130
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 27.1 bits (57), Expect = 1.9
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 10 KLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWDTAVQER 69
K+L LG N GKT ++H ++R + T+ ++ I ++ +D ++
Sbjct: 22 KMLFLGLDNAGKTTLLHMLKNDR-LAVMQPTLHPTSEELAIG----NVRFTTFDLGGHQQ 76
Query: 70 FRTLTTAYYRGAMGIILMYDITNLESFNHLSYWLRNIQEYASPDVIKV---LVGNKCD 124
R L Y+ GI+ + D + E + L + A ++ +V ++GNK D
Sbjct: 77 ARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDAL--LAMEELARVPFLILGNKID 132
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 156 NINIEEAFLTLARKIREYRETKADAFELKERDNVVKPSV 194
N NI + L RK R R+ + ++EL + +PSV
Sbjct: 456 NSNITRSLNRLVRKNRVLRDARGSSYELNRTFDADRPSV 494
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 26.2 bits (55), Expect = 3.4
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 124 DVHENHRAV-----PKDRGQKIADDFDMPFFEVSCKNNINIEEAFLTLARKIREYRETKA 178
DV++++R V PK+ + AD+ P E K I E+ R R+ T+
Sbjct: 84 DVNDSYRLVRQYEAPKELLNEYADESYDPMQERQSKKQIQDRESDYQKQRYDRQLTPTRV 143
Query: 179 DAFE 182
DAF+
Sbjct: 144 DAFQ 147
>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 7.8
Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 146 MPFFEVSCKNNINIEEAFLTLARKIR 171
+PFFE S K N+ ++ LTLA+K++
Sbjct: 376 IPFFESSTKRNV---DSKLTLAKKLQ 398
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 25.0 bits (52), Expect = 7.8
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 87 MYDITNLESFNHLSYWLRNIQEYASPDVIKVLVGNKCDVHENHRAVPK 134
M + T + ++H+ + NI+ S D I +++ K + E H A K
Sbjct: 958 MAEYTIRQRYSHVDNSILNIEGDMSTDRIDLILNEKSKLFETHLAALK 1005
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.323 0.138 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 957,318
Number of Sequences: 5004
Number of extensions: 39839
Number of successful extensions: 134
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 95
Number of HSP's gapped (non-prelim): 25
length of query: 204
length of database: 2,362,478
effective HSP length: 70
effective length of query: 134
effective length of database: 2,012,198
effective search space: 269634532
effective search space used: 269634532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)
- SilkBase 1999-2023 -