GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002449-TA|BGIBMGA002449-PA|IPR005225|Small GTP-binding
protein domain, IPR001806|Ras GTPase, IPR013753|Ras, IPR003577|Ras
small GTPase, Ras type, IPR003579|Ras small GTPase, Rab type,
IPR003578|Ras small GTPase, Rho type, IPR002041|GTP-binding nuclear
protein Ran
         (204 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.           137   3e-34
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    71   3e-14
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            32   0.011
DQ182017-1|ABA56309.1|  383|Anopheles gambiae G(alpha)s protein.       24   3.7  
AY176049-1|AAO19580.1|  515|Anopheles gambiae cytochrome P450 CY...    23   4.9  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   8.6  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   8.6  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score =  137 bits (331), Expect = 3e-34
 Identities = 63/162 (38%), Positives = 101/162 (62%), Gaps = 1/162 (0%)

Query: 9   YKLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWDTAVQE 68
           +KL++LG+S VGK+ +V R+   ++++   STIG  F  + + +D   +K +IWDTA QE
Sbjct: 25  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCIDDTTVKFEIWDTAGQE 84

Query: 69  RFRTLTTAYYRGAMGIILMYDITNLESFNHLSYWLRNIQEYASPDVIKVLVGNKCDVHEN 128
           R+ +L   YYRGA   I++YDI N +SF     W++ +Q  ASP+++  L GNK D+  N
Sbjct: 85  RYHSLAPMYYRGAQAAIVVYDIQNSDSFARAKTWVKELQRQASPNIVIALAGNKADL-AN 143

Query: 129 HRAVPKDRGQKIADDFDMPFFEVSCKNNINIEEAFLTLARKI 170
            R V  +  ++ ADD  + F E S K  +N+ + FL +A+K+
Sbjct: 144 SRVVDYEEAKQYADDNRLLFMETSAKTAVNVNDIFLAIAKKL 185


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 70.5 bits (165), Expect = 3e-14
 Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 15/167 (8%)

Query: 10  KLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWDTAVQER 69
           K +V+GD  VGKTC++  Y  + +   Y+ T   ++   ++ +DGV + L +WDTA QE 
Sbjct: 8   KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTSFDNYSAPMV-VDGVQVSLGLWDTAGQED 66

Query: 70  FRTLTTAYYRGAMGIILMYDITNLESF-NHLSYWLRNIQEYASPDVIKVLVGNKCDVHEN 128
           +  L    Y      ++ Y + +  SF N  S W   I+ +  PD   +LVG K D+ E+
Sbjct: 67  YDRLRPLSYPQTDVFLICYSVASPSSFENVTSKWYPEIKHHC-PDAPIILVGTKIDLRED 125

Query: 129 HR-----------AVPKDRGQKIADDF-DMPFFEVSCKNNINIEEAF 163
                        A+ +++GQK+A+    + + E S      +++ F
Sbjct: 126 RETISLLADQGLSALKREQGQKLANKIRAVKYMECSALTQRGLKQVF 172


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 32.3 bits (70), Expect = 0.011
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 5/123 (4%)

Query: 52   LDGVPIKLQIWDTAVQERFRTLTTAYYRGA--MGIILMYDITNLESFNHLSYWLRNIQEY 109
            L+GV ++  + +    +  R LT    R A       MYD T   ++  LS     + EY
Sbjct: 1647 LEGVVVQETLLEDVKSDAERKLTLHLSRTAEITEFFEMYDSTLKVTYQQLSGQPVQVLEY 1706

Query: 110  ASPDVIKVLVGNKCDVHENHRAVPKDRGQKIADDFDMPFFEVSCKNNINIEEAFLTLARK 169
             SPD ++V    +    +  R + + +  K+  + D   FE      +N + A   L  K
Sbjct: 1707 ESPDTVRV---REILYDDIERPILQTKWTKVHPENDAKMFEFHENFILNFDNATQLLTGK 1763

Query: 170  IRE 172
            + E
Sbjct: 1764 VAE 1766


>DQ182017-1|ABA56309.1|  383|Anopheles gambiae G(alpha)s protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 5  FSATYKLLVLGDSNVGKTCIV 25
          + AT++LL+LG    GK+ IV
Sbjct: 41 YRATHRLLLLGAGESGKSTIV 61


>AY176049-1|AAO19580.1|  515|Anopheles gambiae cytochrome P450
           CYP12F3 protein.
          Length = 515

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 45  FKQKIINLDGVPIKLQIWD 63
           F+  +IN+ G P+K +I D
Sbjct: 494 FRTTVINMPGCPLKFEIRD 512


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 150  EVSCKNNINIEEAFLTLARKIREYRETKADAFELKERDNVVK 191
            EVS   +  I++ F  L + ++EYR+   +       DN+ K
Sbjct: 3189 EVSTLEHSQIDKQFHDLKQTVQEYRQLADNRNSGNWLDNIFK 3230


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 150  EVSCKNNINIEEAFLTLARKIREYRETKADAFELKERDNVVK 191
            EVS   +  I++ F  L + ++EYR+   +       DN+ K
Sbjct: 3192 EVSTLEHSQIDKQFHDLKQTVQEYRQLADNRNSGNWLDNIFK 3233


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.323    0.138    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,703
Number of Sequences: 2123
Number of extensions: 8623
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 7
length of query: 204
length of database: 516,269
effective HSP length: 61
effective length of query: 143
effective length of database: 386,766
effective search space: 55307538
effective search space used: 55307538
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)