GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002449-TA|BGIBMGA002449-PA|IPR005225|Small GTP-binding
protein domain, IPR001806|Ras GTPase, IPR013753|Ras, IPR003577|Ras
small GTPase, Ras type, IPR003579|Ras small GTPase, Rab type,
IPR003578|Ras small GTPase, Rho type, IPR002041|GTP-binding nuclear
protein Ran
         (204 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    25   0.38 
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    25   0.38 
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    25   0.38 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   4.7  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   8.2  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   8.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.2  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 27  RYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWDTAVQERFRTLTTAYYRGAMGIIL 86
           R+ D R  D+Y+     D+ ++++++DG    L   D  + E  +     +Y G  G  +
Sbjct: 136 RFQDSRSKDVYLIDYPEDYGKRVLSMDGYQNILDKKDELLGEWEKRAPMGFY-GTRGKKI 194

Query: 87  MYD 89
           + D
Sbjct: 195 ILD 197


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 27  RYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWDTAVQERFRTLTTAYYRGAMGIIL 86
           R+ D R  D+Y+     D+ ++++++DG    L   D  + E  +     +Y G  G  +
Sbjct: 136 RFQDSRSKDVYLIDYPEDYGKRVLSMDGYQNILDKKDELLGEWEKRAPMGFY-GTRGKKI 194

Query: 87  MYD 89
           + D
Sbjct: 195 ILD 197


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 27  RYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWDTAVQERFRTLTTAYYRGAMGIIL 86
           R+ D R  D+Y+     D+ ++++++DG    L   D  + E  +     +Y G  G  +
Sbjct: 136 RFQDSRSKDVYLIDYPEDYGKRVLSMDGYQNILDKKDELLGEWEKRAPMGFY-GTRGKKI 194

Query: 87  MYD 89
           + D
Sbjct: 195 ILD 197


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 88  YDITNLESFNHLSYWLRNIQEYASPDVIKVLVGN 121
           Y+  N  ++  L Y + NI++   P  + +  GN
Sbjct: 341 YNNNNYNNYKKLYYNIINIEQIPVPVPVPIYCGN 374


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 173 YRETKADAFELKERDNVV 190
           +R+TKA A ++   DNVV
Sbjct: 143 FRQTKAIANKINSWDNVV 160


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 6/39 (15%)

Query: 154 KNNINIEEAFLTLARKIREYRETKADAFELKERDNVVKP 192
           + NI++E+      +K++ Y E     F + +++NV KP
Sbjct: 49  EGNIDVED------KKVQLYCECILKNFNILDKNNVFKP 81


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 125  VHENHRAVPKDRGQKIADD 143
            V E H   P+ R QK +DD
Sbjct: 1080 VKERHLMRPRKRDQKQSDD 1098


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.138    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,998
Number of Sequences: 429
Number of extensions: 2641
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 7
length of query: 204
length of database: 140,377
effective HSP length: 55
effective length of query: 149
effective length of database: 116,782
effective search space: 17400518
effective search space used: 17400518
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)