Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002448-TA|BGIBMGA002448-PA|IPR003577|Ras small GTPase,
Ras type, IPR003579|Ras small GTPase, Rab type, IPR013753|Ras
(295 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 71 3e-13
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 53 6e-08
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 42 8e-05
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 40 6e-04
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 38 0.002
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 38 0.002
SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|ch... 29 0.80
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 28 1.8
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 27 2.4
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 26 5.6
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 26 7.4
SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces... 25 9.8
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 70.5 bits (165), Expect = 3e-13
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 1/130 (0%)
Query: 4 NAVVVRYLTKRYIGEYSSTGDFLYQHRIAFDGATSEVEVLDTCGCAKRGCLAE-HLRWGD 62
+A+ ++ + ++ EY T + Y+ + DG + ++VLDT G + + E ++R G+
Sbjct: 22 SALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQEEYSAMREQYMRTGE 81
Query: 63 AFAVVYSVCDRRSFXXXXXXXXXXXRTRLPGCTAVTLLGNKRDLEHARVIKAEEGQELSL 122
F +VY++ R SF R + V L+ NK DLE RV+ EG++L+
Sbjct: 82 GFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVSRAEGEQLAK 141
Query: 123 RFGCQFYEVS 132
C + E S
Sbjct: 142 SMHCLYVETS 151
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 52.8 bits (121), Expect = 6e-08
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 4 NAVVVRYLTKRYIGEYSSTGDFLYQHRIAFDGATSEVEVLDTCGCAKRGCL-AEHLRWGD 62
+++ V+Y+ ++ Y T + + I + G E++DT G + L ++H
Sbjct: 20 SSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDEYSILNSKHSIGIH 79
Query: 63 AFAVVYSVCDRRSFXXXXXXXXXXXRTRLPGCTAVTLLGNKRDLEHARVIKAEEGQELSL 122
+ +VYS+ + SF + ++GNK DL R + AEEG+ L+
Sbjct: 80 GYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQRAVTAEEGKALAN 139
Query: 123 RFGCQFYEVS 132
+ C + E S
Sbjct: 140 EWKCAWTEAS 149
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 42.3 bits (95), Expect = 8e-05
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 31 IAFDGATSEVEVLDTCGCAK-RGCLAEHLRWGDAFAVVYSVCDRRSFXXXXXXXXXXXRT 89
I DG ++++ DT G + R + R ++Y V D++SF +
Sbjct: 51 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQH 110
Query: 90 RLPGCTAVTLLGNKRDLEHARVIKAEEGQELSLRFGCQFYEVS 132
+ L+GNK D E R + E+GQ L+ G +F E S
Sbjct: 111 ASENVYKI-LIGNKCDCEDQRQVSFEQGQALADELGVKFLEAS 152
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 39.5 bits (88), Expect = 6e-04
Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 3/129 (2%)
Query: 6 VVVRYLTKRYIGEYSST-GDFLYQHRIAFDGATSEVEVLDTCGCAK-RGCLAEHLRWGDA 63
+++R+ + E ST G I D + ++ DT G + R + + R
Sbjct: 26 LLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVG 85
Query: 64 FAVVYSVCDRRSFXXXXXXXXXXXRTRLPGCTAVTLLGNKRDLEHARVIKAEEGQELSLR 123
+VY + + SF R + L+GNK DL H R + EE Q +
Sbjct: 86 ALIVYDITKQSSFDNVGRWLKEL-REHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAE 144
Query: 124 FGCQFYEVS 132
F E S
Sbjct: 145 NNLSFIETS 153
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 37.9 bits (84), Expect = 0.002
Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 5/131 (3%)
Query: 5 AVVVRYLTKRYIGEYSST-G-DFLYQHRIAFDGATSEVEVLDTCGCAK-RGCLAEHLRWG 61
+++ R++ ++ Y +T G DFL + + + T +++ DT G + R + ++R
Sbjct: 26 SLITRFMYDQFDNTYQATIGIDFLSK-TMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 84
Query: 62 DAFAVVYSVCDRRSFXXXXXXXXXXXRTRLPGCTAVTLLGNKRDLEHARVIKAEEGQELS 121
+VY + + SF R + L+GNK DL R + EEG++ +
Sbjct: 85 SVAIIVYDITNHNSFVNTEKWIEDV-RAERGDDVIIVLVGNKTDLADKRQVTQEEGEKKA 143
Query: 122 LRFGCQFYEVS 132
E S
Sbjct: 144 KELKIMHMETS 154
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 37.5 bits (83), Expect = 0.002
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 39 EVEVLDTCGCAKRGCLAEHLRWGDAFAV-VYSVCDRRSFXXXXXXXXXXXRTRLPGCTAV 97
++++ DT G K +A + G A AV VY V ++ SF R P V
Sbjct: 63 KLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDI-RAMAPSTICV 121
Query: 98 TLLGNKRDLEHARVIKAEEGQE 119
L G+K DL++ R + EE E
Sbjct: 122 VLAGSKSDLQNQRQVSTEEAAE 143
>SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 77
Score = 29.1 bits (62), Expect = 0.80
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 34 DGATSEVEVLDTCGCAKRGCLAEHLRWGDAF 64
DG E +V DT K GC+ EHLR D +
Sbjct: 9 DGEEEEKDVWDTA-LEKGGCVEEHLRLNDCY 38
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 30 RIAFDGATSEVEVLDTCGCAKRGCLAEHLR 59
R AFDGA+S+ E L TCG K L + +R
Sbjct: 50 RQAFDGASSKNEYLTTCG-KKTAQLRDQIR 78
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 191 RFVAAMPRRKLAAYSVSKVGFTNKESTAESCKGTRVRSIATMP 233
+F++A K +S+ ++G E+TA + VR TMP
Sbjct: 652 KFISASEEFKAVKHSLKRIGDEEIENTALQTEKIHVRDAKTMP 694
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 5.6
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 200 KLAAYSVSKVGFTNKESTAESCKGTRVRSIAT--------MPRRKLAVIPSLKIIRTIES 251
K A +S T+ S E K R RS +T +P L + +LK R +
Sbjct: 391 KTAPTQLSASAKTSAISLPEVAKKERNRSNSTNDDYSSTRLPSSVLHRLEALKEARKLSE 450
Query: 252 GLIRRIYAGDRHDPRPEQQKRE 273
L RI+A D H P P +K E
Sbjct: 451 QLPNRIFAQDPH-PSPRLKKEE 471
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 25.8 bits (54), Expect = 7.4
Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 11/121 (9%)
Query: 7 VVRYLTKRYIGE-YSSTGDFLYQHRIAFDGATSEVEVLDTCGCAKRGCLAEHLRWGDAFA 65
++ TK Y + Y T Y H I DG + E+ + DT G + L L + D
Sbjct: 29 LLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEYDQL-RSLSYSDTHV 87
Query: 66 VV--YSVCDRRSFXXXXXXXXXXXRTRLPGCTAVTLL-------GNKRDLEHARVIKAEE 116
++ ++V R S + PG V + ++ ++H+++I EE
Sbjct: 88 IMICFAVDSRDSLENVITKWLPEVSSNCPGVKLVLVALKCDLRGADEEQVDHSKIIDYEE 147
Query: 117 G 117
G
Sbjct: 148 G 148
>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 143
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 237 LAVIPSLKIIRTIESGLIRRIYAGDRHDPRPEQ 269
LAV +R+ G + RIY G R P+PE+
Sbjct: 28 LAVEEGPASLRSYSIGNVSRIYDGIRVPPKPEE 60
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.135 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 998,175
Number of Sequences: 5004
Number of extensions: 32702
Number of successful extensions: 70
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 12
length of query: 295
length of database: 2,362,478
effective HSP length: 72
effective length of query: 223
effective length of database: 2,002,190
effective search space: 446488370
effective search space used: 446488370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 53 (25.4 bits)
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