GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002448-TA|BGIBMGA002448-PA|IPR003577|Ras small GTPase,
Ras type, IPR003579|Ras small GTPase, Rab type, IPR013753|Ras
         (295 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            44   4e-06
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    31   0.029

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 44.4 bits (100), Expect = 4e-06
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 5/119 (4%)

Query: 4   NAVVVRYLTKRYIGEY--SSTGDFLYQHRIAFDGATSEVEVLDTCGCAKRGCLAE-HLRW 60
           +++V+R++ K    EY  S+ G       +  D  T + E+ DT G  +   LA  + R 
Sbjct: 38  SSLVLRFV-KGQFHEYQESTIGAAFLTQTLCIDDTTVKFEIWDTAGQERYHSLAPMYYRG 96

Query: 61  GDAFAVVYSVCDRRSFXXXXXXXXXXXRTRLPGCTAVTLLGNKRDLEHARVIKAEEGQE 119
             A  VVY + +  SF           R   P    + L GNK DL ++RV+  EE ++
Sbjct: 97  AQAAIVVYDIQNSDSFARAKTWVKELQRQASPNIV-IALAGNKADLANSRVVDYEEAKQ 154


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 31.5 bits (68), Expect = 0.029
 Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 2/106 (1%)

Query: 6   VVVRYLTKRYIGEYSSTGDFLYQHRIAFDGATSEVEVLDTCGCAKRGCLAE-HLRWGDAF 64
           +++ Y T  + GEY  T    Y   +  DG    + + DT G      L        D F
Sbjct: 22  MLISYTTDSFPGEYVPTSFDNYSAPMVVDGVQVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81

Query: 65  AVVYSVCDRRSFXXXXXXXXXXXRTRLPGCTAVTLLGNKRDLEHAR 110
            + YSV    SF           +   P    + L+G K DL   R
Sbjct: 82  LICYSVASPSSFENVTSKWYPEIKHHCPD-APIILVGTKIDLREDR 126


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.322    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,982
Number of Sequences: 2123
Number of extensions: 7821
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 2
length of query: 295
length of database: 516,269
effective HSP length: 64
effective length of query: 231
effective length of database: 380,397
effective search space: 87871707
effective search space used: 87871707
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 48 (23.4 bits)