GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002448-TA|BGIBMGA002448-PA|IPR003577|Ras small GTPase,
Ras type, IPR003579|Ras small GTPase, Rab type, IPR013753|Ras
         (295 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    26   0.46 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.46 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.4  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 3/24 (12%)

Query: 50  KRGC--LA-EHLRWGDAFAVVYSV 70
           KRGC  LA  H+RW  AFA+  +V
Sbjct: 498 KRGCYQLAINHIRWNSAFAIAPAV 521



 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 35 GATSEVEVLDTCG 47
          G T  V +LDTCG
Sbjct: 14 GITIGVHILDTCG 26


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 3/24 (12%)

Query: 50  KRGC--LA-EHLRWGDAFAVVYSV 70
           KRGC  LA  H+RW  AFA+  +V
Sbjct: 588 KRGCYQLAINHIRWNSAFAIAPAV 611



 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 35  GATSEVEVLDTCG 47
           G T  V +LDTCG
Sbjct: 104 GITIGVHILDTCG 116


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/50 (20%), Positives = 24/50 (48%)

Query: 234 RRKLAVIPSLKIIRTIESGLIRRIYAGDRHDPRPEQQKREEETAVSEHMM 283
           R  L  IP L+ + T+ S  +      ++      QQ+ +++   ++H++
Sbjct: 386 RELLKKIPDLRTLNTLHSEKLLAFKMTEQQQQMQAQQQHQQQQQQTQHVI 435


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,026
Number of Sequences: 429
Number of extensions: 1994
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 295
length of database: 140,377
effective HSP length: 57
effective length of query: 238
effective length of database: 115,924
effective search space: 27589912
effective search space used: 27589912
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 43 (21.4 bits)