Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002447-TA|BGIBMGA002447-PA|undefined
(133 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 29 0.32
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 28 0.42
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 27 1.3
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 27 1.3
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 26 1.7
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 26 2.3
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 26 2.3
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 4.0
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 25 4.0
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 25 4.0
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 25 5.2
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 25 5.2
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 24 6.9
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 24 6.9
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 24 6.9
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|... 24 6.9
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 24 6.9
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 24 9.1
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 24 9.1
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 24 9.1
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 24 9.1
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc... 24 9.1
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 24 9.1
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 28.7 bits (61), Expect = 0.32
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 58 AETPSDQLLQEVMKTFEDIPSKVQQY 83
+E D LQ +++TFED+P +Q Y
Sbjct: 184 SEDLEDLNLQSIVQTFEDLPEGIQSY 209
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 28.3 bits (60), Expect = 0.42
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 4 TPTTSGAAKKPQIPSPATSPSVMP 27
TP++S + P IPS A +PSV P
Sbjct: 696 TPSSSASLYPPLIPSEARTPSVQP 719
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 26.6 bits (56), Expect = 1.3
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 1 MFHTPTTSGAAKKPQIPSPATSPS-VMPDAARTFIKRPETKRRSLDNMDLYRKQQQYYAE 59
+FH + K+ +I + A + + P R F+ R+ D+ + Q ++E
Sbjct: 343 VFHDEKLNELKKQVEISASAAQLNGLYPQKKRAFVSHFSQNRKPYSQSDISKAQSSSFSE 402
Query: 60 TPSD 63
PS+
Sbjct: 403 EPSN 406
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 26.6 bits (56), Expect = 1.3
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 7 TSGAAKKPQIPSPATSPSVMPDAARTFIKRPETKR-RSLDNMDLYRKQQQYYAETPSDQL 65
T+ A+ P P MP A I + + ++ RSL +M ++QQQ + Q
Sbjct: 215 TALLARNGNPPIPMQKLQSMPPARLISIYQNQIQKFRSLQHMQQQQQQQQQQQQQQQQQQ 274
Query: 66 LQEVMKTFEDIPSKVQQYPQ 85
Q+ + + + +Q PQ
Sbjct: 275 QQQQQQQQQQQQQQQKQAPQ 294
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 26.2 bits (55), Expect = 1.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 2 FHTPTTSGAAKKPQIPSPATSPSVMP 27
F PT +KP IP T S++P
Sbjct: 177 FQLPTAEDVIEKPSIPDNDTDDSILP 202
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 2.3
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 1 MFHTPTTSGAAKKPQIPSPATSPSVMPDAARTFIKRPETKRRSLDNMDLYRKQQQYYAET 60
+FHTPT + Q+ S +SP V+PD K SL + L + + +
Sbjct: 138 LFHTPTIP---RTTQLSSKTSSPIVIPDDNEQVASPLSKKAASLTSSPL----KDFQSSP 190
Query: 61 PSDQLLQE 68
P +LQ+
Sbjct: 191 PLSTVLQK 198
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 25.8 bits (54), Expect = 2.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 11 AKKPQIPSPATSPSVMPDAARTFIKRPETKRRSLDNMD 48
A+K ++ S + D R + +PE +RSL+N D
Sbjct: 517 AEKERLAKARRSQVIQRDLIRPSVTQPEKWKRSLENED 554
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.0 bits (52), Expect = 4.0
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 56 YYAETPSDQLLQEVMKTFEDIPSKVQQYPQMRRDIKS-FLESQSD 99
YY E +L+ V++ E+I QYP+ D + FL+ S+
Sbjct: 816 YYCERYPKLILKRVLRFLEEIGFITSQYPRKLTDTGALFLKHPSE 860
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 4.0
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 76 IPSKVQQYPQMRRDIKSFLESQSDKSIRILFELSHDVIA--VKGTCC 120
IPS +QQ RD+ +L+ Q KS L + I +K CC
Sbjct: 176 IPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCC 222
>SPAC17A5.09c |||protein phosphatase regulatory subunit
Glc9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 25.0 bits (52), Expect = 4.0
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 12 KKPQIPSPATSPSVMPDAARTFIKRPETKRRSLDNMDLYRKQQQYYAET 60
KK P P T P+ D +K P T + S DN L K++ + ET
Sbjct: 147 KKEPFPVPCTEPTTSGDRYTVRMKAP-TPKYSTDN-HLPSKKELFPRET 193
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 24.6 bits (51), Expect = 5.2
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 29 AARTFIKRPETKRRSLDNMDLYRKQQQYYAETPSDQLLQEVMKTFEDI 76
A R F KR E ++L+ + K+ +DQL Q+V + E++
Sbjct: 89 AQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 136
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 24.6 bits (51), Expect = 5.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 6 TTSGAAKKPQIPSPATSPSVMPDAARTFIKRPETKRRS 43
+T + P + SP++ S A+R+F + P+ R+S
Sbjct: 131 STDLSGSNPSLKSPSSINSAKLRASRSFFRFPKWSRKS 168
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.2 bits (50), Expect = 6.9
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 18 SPATSPSVMPD---AARTFIKRPETKRRSLDNMDLYRKQQQYYAETPSDQLLQEVMKTFE 74
SP S + P A F+K K+R++D + K Y+A+ L ++ F
Sbjct: 373 SPGPSKLIPPAYQYIAEQFLKDSRKKKRNIDVLQWQNKGNTYHAKGKHYSLSFSIINIFW 432
Query: 75 DIPSKVQQYPQMRRDIKSF-LESQSDK 100
K + + I F L +Q K
Sbjct: 433 STALKSYIFEKFTNTILGFWLSTQHHK 459
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 24.2 bits (50), Expect = 6.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 84 PQMRRDIKSFLESQSDKSIRILFELSH 110
PQ+ ++ K S DKSIR+ + H
Sbjct: 131 PQLTKESKKGSSSAMDKSIRLSIHIMH 157
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 24.2 bits (50), Expect = 6.9
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 45 DNMDLYRKQQQYYAETPSDQLLQEVMK 71
DN++ KQ++ +E+P + +L++V K
Sbjct: 105 DNVEQEIKQKRSLSESPQESMLEKVSK 131
>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 24.2 bits (50), Expect = 6.9
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 34 IKRPETKRRSLDNMDLYRKQQQYYAETPSDQLLQEV 69
++R K++ DN+D + + YY P L Q V
Sbjct: 181 LRRSSNKKKDPDNLDTVQSENSYY-RIPYGGLFQYV 215
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 24.2 bits (50), Expect = 6.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 4 TPTTSGAAKKPQIPSPATSPSV 25
T T S ++ P IPS +++PS+
Sbjct: 110 TSTPSNSSSLPSIPSSSSTPSI 131
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 23.8 bits (49), Expect = 9.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 1 MFHTPTTSGAAKKPQIPSPATSP 23
MF T A+KKP + S T P
Sbjct: 532 MFQVQTIDDASKKPTLQSTTTPP 554
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 23.8 bits (49), Expect = 9.1
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 2 FHTPTTSGAAKKPQIPSPATSPSVMPDAARTFIKRP 37
F+ PT A+ P++ PS+ PD I++P
Sbjct: 658 FNAPTVFSLAEDYTSFYPSSLPSLFPDLVTRCIQKP 693
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 23.8 bits (49), Expect = 9.1
Identities = 15/69 (21%), Positives = 31/69 (44%)
Query: 3 HTPTTSGAAKKPQIPSPATSPSVMPDAARTFIKRPETKRRSLDNMDLYRKQQQYYAETPS 62
+TP + + K SPS+M + F T R+S+++ D+ + + ++
Sbjct: 1068 YTPGSDMPSAKLYDQQLTLSPSLMTNQGSNFSSTDSTPRKSINSSDVESRSKTDGPKSMH 1127
Query: 63 DQLLQEVMK 71
D + Q M+
Sbjct: 1128 DLIKQLHMR 1136
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 23.8 bits (49), Expect = 9.1
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 49 LYRKQQQYYAETPSDQLLQEVMKTFEDIPSKVQQYPQMRRD 89
L + + Y+A TP + Q++MK+ SK + +R+D
Sbjct: 112 LAKLDESYFASTPEELDYQQIMKSL----SKQEDQSPLRQD 148
>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 23.8 bits (49), Expect = 9.1
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 4 TPTTSGAAKKPQIPSPATSPSVMPDAARTFIKRPETKRRSLDNMDLYRKQQQYYAETPSD 63
T ++ KP IP+ AT P+ P +T I P N Q Y TP
Sbjct: 81 TSFSTNEPAKPPIPNAATKPTFPP---QTEISNPPAVSHQSKN----TSQDPPYVSTPIG 133
Query: 64 QLLQEVM 70
+ VM
Sbjct: 134 DIALRVM 140
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 23.8 bits (49), Expect = 9.1
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 57 YAETPSDQLLQEVMKTFEDIPSKVQQYPQMR---RDIKSFLESQSDKSIRILFELSHDVI 113
Y D +E+ K ED+ K+Q+ + R ++ LE + S++ + +L+ +
Sbjct: 558 YELKDDDNYNEELDKLVEDVRKKLQEKEEAESSLRSVRERLEIRISLSVQSINDLTENK- 616
Query: 114 AVKGTCCKKYSAS 126
+K K YS +
Sbjct: 617 KIKTKTLKSYSGT 629
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.129 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 615,470
Number of Sequences: 5004
Number of extensions: 24373
Number of successful extensions: 110
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 24
length of query: 133
length of database: 2,362,478
effective HSP length: 66
effective length of query: 67
effective length of database: 2,032,214
effective search space: 136158338
effective search space used: 136158338
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)
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