GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002447-TA|BGIBMGA002447-PA|undefined
         (133 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    25   0.21 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   2.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   7.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   7.9  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization
          protein protein.
          Length = 250

 Score = 25.4 bits (53), Expect = 0.21
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 26 MPDAARTFIKRPETKR 41
          MPD  RT  KRP+TK+
Sbjct: 30 MPDDMRTVTKRPKTKK 45


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 41  RRSLDNMDLYRKQQQYYAETPSDQLLQEVMKTFEDIPSKVQ 81
           +  LD MD  +K +     TP + +L+   +     P K +
Sbjct: 497 KAELDKMDKEKKLEDLEMGTPLENILESCQQDETHAPEKTK 537


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 80  VQQYPQMRRDIKSFLESQSDK 100
           + QYP MRR ++S    + +K
Sbjct: 555 LDQYPLMRRTMESVAAERLNK 575


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 80  VQQYPQMRRDIKSFLESQSDK 100
           + QYP MRR ++S    + +K
Sbjct: 523 LDQYPLMRRTMESVAAERLNK 543


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.129    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,014
Number of Sequences: 429
Number of extensions: 1284
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 133
length of database: 140,377
effective HSP length: 52
effective length of query: 81
effective length of database: 118,069
effective search space:  9563589
effective search space used:  9563589
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
S2: 40 (20.2 bits)