Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002446-TA|BGIBMGA002446-PA|IPR003577|Ras small GTPase,
Ras type, IPR003579|Ras small GTPase, Rab type, IPR013753|Ras
(232 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 52 5e-08
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 46 6e-06
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 34 0.020
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 31 0.11
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 31 0.14
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 27 2.3
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 4.1
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 26 5.4
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 25 7.1
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 25 7.1
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 52.4 bits (120), Expect = 5e-08
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 2/134 (1%)
Query: 3 GLCKSVV-VRYLTKRYIGEYSSTGDFLYQHRVAFDGVVSEVEILDTSNCAIRGCLAE-HV 60
G+ KS + ++ + ++ EY T + Y+ + DG + +++LDT+ + E ++
Sbjct: 18 GVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQEEYSAMREQYM 77
Query: 61 RWGDAFAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEEGQ 120
R G+ F +VY++ V L+ NK DLE R V EG+
Sbjct: 78 RTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVSRAEGE 137
Query: 121 ELSLRFGCQFYEVS 134
+L+ C + E S
Sbjct: 138 QLAKSMHCLYVETS 151
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 45.6 bits (103), Expect = 6e-06
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 1/129 (0%)
Query: 7 SVVVRYLTKRYIGEYSSTGDFLYQHRVAFDGVVSEVEILDTSNCAIRGCL-AEHVRWGDA 65
S+ V+Y+ ++ Y T + + + + G EI+DT+ L ++H
Sbjct: 21 SLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDEYSILNSKHSIGIHG 80
Query: 66 FAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEEGQELSLR 125
+ +VYS+ + ++GNK DL R V AEEG+ L+
Sbjct: 81 YVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQRAVTAEEGKALANE 140
Query: 126 FGCQFYEVS 134
+ C + E S
Sbjct: 141 WKCAWTEAS 149
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 33.9 bits (74), Expect = 0.020
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 101 LLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
L+GNK D E R+V E+GQ L+ G +F E S
Sbjct: 119 LIGNKCDCEDQRQVSFEQGQALADELGVKFLEAS 152
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 99 VTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
+ L+GNK DL H R V EE Q + F E S
Sbjct: 118 IMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETS 153
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 31.1 bits (67), Expect = 0.14
Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 5/131 (3%)
Query: 7 SVVVRYLTKRYIGEYSST-G-DFLYQHRVAFDGVVSEVEILDTSNCA-IRGCLAEHVRWG 63
S++ R++ ++ Y +T G DFL + D V +++ DT+ R + ++R
Sbjct: 26 SLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTV-RLQLWDTAGQERFRSLIPSYIRDS 84
Query: 64 DAFAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEEGQELS 123
+VY + + L+GNK DL R+V EEG++ +
Sbjct: 85 SVAIIVYDITNHNSFVNTEKWIEDVRAERGDD-VIIVLVGNKTDLADKRQVTQEEGEKKA 143
Query: 124 LRFGCQFYEVS 134
E S
Sbjct: 144 KELKIMHMETS 154
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 8 VVVRYLTKRYIGEYSSTGDFLYQHRVAFDGVVSEVEI 44
++V Y+ KRY+GE + F R G++S +
Sbjct: 27 ILVTYVLKRYVGEVQDSEHFTTASRSVKTGLISSAVV 63
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 19 GEYSSTGDFLYQHRVAFDGVVSEVEILDTSNCAIRGCLAEHVRW 62
GEY T D L+ +R G L++ +C + G + + W
Sbjct: 974 GEYCKTNDMLWHYRSYVHGNSRISVFLESFSCPVPGLEEKIIMW 1017
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 99 VTLLGNKRDLEHAREVHAEEGQE 121
V L G+K DL++ R+V EE E
Sbjct: 121 VVLAGSKSDLQNQRQVSTEEAAE 143
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 19 GEYSSTGDFLYQH-RVAFDGVVSEVEILDTSNCAIRG 54
G+YSS+ +FL +H + D S+ +L+ N + G
Sbjct: 259 GDYSSSEEFLKEHLNILADEEESDAILLEAFNAELEG 295
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 176 GLSNKEYTAESCKGTRVRSVAAVPRRKLAAYSVSKVIGTIFG 217
GL+++ YT + KG S + R K A Y+ +G G
Sbjct: 70 GLNDESYTGDPGKGPEYTSSTMLKREKQARYAFWGFLGLTGG 111
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.133 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 721,453
Number of Sequences: 5004
Number of extensions: 20181
Number of successful extensions: 62
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 10
length of query: 232
length of database: 2,362,478
effective HSP length: 71
effective length of query: 161
effective length of database: 2,007,194
effective search space: 323158234
effective search space used: 323158234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)
- SilkBase 1999-2023 -