Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002446-TA|BGIBMGA002446-PA|IPR003577|Ras small GTPase,
Ras type, IPR003579|Ras small GTPase, Rab type, IPR013753|Ras
(232 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_03_0038 - 7297210-7297248,7297361-7297429,7297524-7297731,729... 43 2e-04
07_03_1397 + 26269186-26269525,26269727-26269932,26270225-262703... 38 0.007
03_06_0501 - 34380155-34380637,34380961-34381029,34382206-343822... 37 0.016
02_04_0402 + 22618998-22619043,22619206-22619345,22620067-226201... 36 0.021
04_04_0191 + 23468410-23468455,23468560-23468699,23469119-234692... 36 0.028
12_02_1213 + 27058329-27058370,27058634-27058711,27058807-270589... 36 0.037
01_06_1343 - 36461476-36461961,36463355-36463519 35 0.064
08_02_1318 - 26111031-26111276,26112139-26112427,26112936-261130... 34 0.11
07_01_0685 - 5177340-5177363,5177770-5177865,5177991-5178053,517... 33 0.15
03_06_0637 - 35219212-35219754,35220405-35220587 33 0.15
06_03_1187 + 28267535-28267568,28267620-28267645,28267808-282679... 33 0.26
05_03_0286 - 11623575-11624063,11625098-11625262 33 0.26
03_01_0647 + 4745788-4745907,4746510-4746591,4746847-4746958,474... 33 0.26
06_03_1387 - 29820358-29821035 32 0.34
03_05_0601 + 26039326-26039367,26039958-26040035,26040136-260403... 31 0.79
07_01_0926 - 7775536-7775616,7775695-7775787,7775903-7775965,777... 31 1.0
06_03_0414 - 20548577-20549006,20553521-20553744 31 1.0
03_06_0475 + 34193951-34194023,34195414-34195486,34195572-341956... 31 1.0
01_06_0712 + 31397167-31397402,31399823-31400252 31 1.0
10_08_0250 - 16179646-16179759,16180197-16180325,16180519-161806... 30 1.4
05_05_0118 - 22504483-22504566,22504650-22504742,22504852-225049... 30 1.4
10_06_0181 - 11532765-11533203,11536867-11537036 29 2.4
09_04_0479 - 17948043-17949037,17949554-17949715,17949809-179502... 29 2.4
09_02_0464 - 9591139-9591571,9592601-9592818 29 2.4
05_06_0082 - 25425050-25425479,25426551-25426783 29 2.4
05_01_0036 + 253734-253904,255216-255707 29 3.2
01_06_0186 + 27294973-27295211,27295610-27296045 29 3.2
05_07_0127 - 27872803-27873238,27873842-27874059 29 4.2
03_01_0326 + 2535800-2535938,2536891-2536959,2537310-2537375,253... 29 4.2
>10_03_0038 -
7297210-7297248,7297361-7297429,7297524-7297731,
7297829-7297911,7298859-7298998,7299132-7299183
Length = 196
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
Query: 33 VAFDGVVSEVEILDTSNCAIRGCLAE-HVRWGDAFAVVYSVCXXXXXXXXXXXXXXXXXX 91
VA DG ++++I DT+ C+ + R A +VY +
Sbjct: 50 VAVDGKNTKLQIWDTAGQEAFRCITRSYYRGNAACLLVYDITRRETFFNHLASWLEDATQ 109
Query: 92 XXXGCAAVTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
+ L+GNK DL H R V +EG++ + G F E S
Sbjct: 110 HASARMTIILIGNKCDLSHRRVVSYQEGEQFAKEHGLLFMEAS 152
>07_03_1397 +
26269186-26269525,26269727-26269932,26270225-26270327,
26270570-26270577
Length = 218
Score = 37.9 bits (84), Expect = 0.007
Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 2/119 (1%)
Query: 17 YIGEYSSTGDFLYQHRVAFDGVVSEVEILDTSNCA-IRGCLAEHVRWGDAFAVVYSVCXX 75
Y S+ G ++ DG + +I DT+ R + + R +VY +
Sbjct: 40 YPNSKSTIGVEFQTQKLVIDGKEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR 99
Query: 76 XXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
+ L+GNK DL+HAREV EG+ L+ G F E S
Sbjct: 100 QTFDSVGRWLNELHTHSDMNVVTI-LVGNKTDLKHAREVSTAEGKALAESQGLFFMETS 157
>03_06_0501 -
34380155-34380637,34380961-34381029,34382206-34382229,
34382622-34382786
Length = 246
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 99 VTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
+ ++GNK DL H R V E+GQ L+ + G F E S
Sbjct: 151 IMMVGNKSDLNHLRSVPEEDGQALAEKEGLSFLETS 186
>02_04_0402 +
22618998-22619043,22619206-22619345,22620067-22620149,
22620234-22620438,22620524-22620592,22621099-22621188
Length = 210
Score = 36.3 bits (80), Expect = 0.021
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 99 VTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
V L+GNK DL H R V EEG++ + G F E S
Sbjct: 114 VMLIGNKCDLSHRRAVSYEEGEQFAKEHGLVFMEAS 149
>04_04_0191 +
23468410-23468455,23468560-23468699,23469119-23469201,
23469346-23469550,23469632-23469735,23470290-23470449
Length = 245
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 99 VTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
+ L+GNK DL H R V EEG++ + G F E S
Sbjct: 114 IMLVGNKSDLSHRRAVSYEEGEQFAKEHGLIFMEAS 149
>12_02_1213 +
27058329-27058370,27058634-27058711,27058807-27058974,
27059834-27059882,27060084-27060157,27060692-27060785,
27060924-27061003,27061311-27061322
Length = 198
Score = 35.5 bits (78), Expect = 0.037
Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 1/129 (0%)
Query: 7 SVVVRYLTKRYIGEYSST-GDFLYQHRVAFDGVVSEVEILDTSNCAIRGCLAEHVRWGDA 65
S+V+R++ +++ ST G + +A + + EI DT+ LA G A
Sbjct: 26 SLVLRFVKGQFVEFQESTIGAAFFSQTLAVNDETVKFEIWDTAGQERYHSLAPMYYRGAA 85
Query: 66 FAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEEGQELSLR 125
A+V + L GNK D+ AR+V AEE + +
Sbjct: 86 AAIVVYDITNAASFTRAKKWVQELQAQGNPNTIMALAGNKADMVEARQVPAEEAKTYAQE 145
Query: 126 FGCQFYEVS 134
G F E S
Sbjct: 146 NGLFFMETS 154
>01_06_1343 - 36461476-36461961,36463355-36463519
Length = 216
Score = 34.7 bits (76), Expect = 0.064
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 99 VTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
V ++GNK DL H R V E+G S + G F E S
Sbjct: 120 VMMVGNKSDLNHLRSVPEEDGHAFSEKEGLSFLETS 155
>08_02_1318 -
26111031-26111276,26112139-26112427,26112936-26113036,
26113628-26113878,26114842-26114865,26115793-26116129
Length = 415
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 98 AVTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
A L+GNK DL++ REV EEG+ L+ G F E S
Sbjct: 128 AKMLVGNKCDLDNIREVPVEEGKALAEAEGLFFMETS 164
>07_01_0685 -
5177340-5177363,5177770-5177865,5177991-5178053,
5178138-5178232,5178941-5179028,5179372-5179444,
5179866-5179920,5180355-5180463
Length = 200
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 101 LLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
L+GNK D++ R V +GQ+L+ +G +F+E S
Sbjct: 129 LVGNKVDMDTKRVVSTAQGQKLADEYGMKFFETS 162
>03_06_0637 - 35219212-35219754,35220405-35220587
Length = 241
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 99 VTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
V L+GNK DL+H R V E+ + R G F E S
Sbjct: 144 VMLIGNKIDLKHLRSVSLEDATSFAEREGLSFVETS 179
>06_03_1187 +
28267535-28267568,28267620-28267645,28267808-28267975,
28268148-28268196,28268329-28268402,28268512-28268841
Length = 226
Score = 32.7 bits (71), Expect = 0.26
Identities = 29/113 (25%), Positives = 41/113 (36%)
Query: 22 SSTGDFLYQHRVAFDGVVSEVEILDTSNCAIRGCLAEHVRWGDAFAVVYSVCXXXXXXXX 81
S+ G + + D +++I DT+ LA G A AVV
Sbjct: 22 STIGAAFFSQVLIMDEATVKLDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISSTDSYIR 81
Query: 82 XXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
+ L+GNK DLE R+V +E E + R G F E S
Sbjct: 82 ARKWVDELQRQGNPHLVMALVGNKVDLEEKRQVGTQEAMEYAERNGLFFIETS 134
>05_03_0286 - 11623575-11624063,11625098-11625262
Length = 217
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 99 VTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
+ ++GNK DL H R V +EG+ L+ + G F E S
Sbjct: 120 IMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETS 155
>03_01_0647 +
4745788-4745907,4746510-4746591,4746847-4746958,
4747607-4747697,4747805-4747969
Length = 189
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 95 GCAAVTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
G + L+GNK DL R++ +EG+ + G F E S
Sbjct: 88 GDVIIVLVGNKTDLVDKRQISTDEGEAKAQEHGAMFMETS 127
>06_03_1387 - 29820358-29821035
Length = 225
Score = 32.3 bits (70), Expect = 0.34
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 99 VTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
V L+GNK DL HAR V A+E + G F E S
Sbjct: 115 VMLIGNKADLSHARAVAADEAAAFAEDQGLFFSEAS 150
>03_05_0601 +
26039326-26039367,26039958-26040035,26040136-26040303,
26040994-26041042,26041502-26041575,26041940-26041948
Length = 139
Score = 31.1 bits (67), Expect = 0.79
Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 1/113 (0%)
Query: 7 SVVVRYLTKRYIGEYSST-GDFLYQHRVAFDGVVSEVEILDTSNCAIRGCLAEHVRWGDA 65
S+V+R++ +++ ST G + +A + + EI DT+ LA G A
Sbjct: 26 SLVLRFVKGQFVEFQESTIGAAFFSQTLAVNDETVKFEIWDTAGQERYHSLAPMYYRGAA 85
Query: 66 FAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEE 118
A+V V L GNK DL R+V EE
Sbjct: 86 AAIVVYDITNPASFTRAKKWVQELQAQGNSSTVVALAGNKADLLETRQVQIEE 138
>07_01_0926 -
7775536-7775616,7775695-7775787,7775903-7775965,
7776326-7776423,7776661-7776761,7776865-7776937,
7778575-7778647
Length = 193
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 101 LLGNKRDLEHA-REVHAEEGQELSLRFGCQFYEVS 134
L+GNK D++ + R V +GQ L+ +G +F+E S
Sbjct: 103 LVGNKADMDESKRAVPTSKGQALADEYGIKFFETS 137
>06_03_0414 - 20548577-20549006,20553521-20553744
Length = 217
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 99 VTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
V L+GNK DL H V +EG+ + R F E S
Sbjct: 122 VMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETS 157
>03_06_0475 +
34193951-34194023,34195414-34195486,34195572-34195672,
34195912-34196009,34196326-34196388,34196534-34196626,
34196697-34196774
Length = 192
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 101 LLGNKRDLEHA-REVHAEEGQELSLRFGCQFYEVS 134
L+GNK D++ + R V +GQ L+ +G +F+E S
Sbjct: 103 LVGNKADMDESKRAVPTSKGQALADEYGIKFFETS 137
>01_06_0712 + 31397167-31397402,31399823-31400252
Length = 221
Score = 30.7 bits (66), Expect = 1.0
Identities = 35/135 (25%), Positives = 51/135 (37%), Gaps = 4/135 (2%)
Query: 3 GLCKSVVVRYLTKR-YIGEYSSTGDFLYQHR-VAFDGVVSEVEILDTSNCA-IRGCLAEH 59
G+ KS ++ TK + E ST + R + DG V + +I DT+ R + +
Sbjct: 28 GVGKSNLLSRFTKNEFCLESKSTIGVEFATRSIQVDGKVVKAQIWDTAGQERYRAITSAY 87
Query: 60 VRWGDAFAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEEG 119
R +VY V V L+GNK DL H V E+G
Sbjct: 88 YRGAVGALLVYDVTRRATFDNVARWLKELRDHTDPSIV-VMLVGNKSDLRHLVAVSTEDG 146
Query: 120 QELSLRFGCQFYEVS 134
+E + F E S
Sbjct: 147 KEYAEAESLYFMETS 161
>10_08_0250 -
16179646-16179759,16180197-16180325,16180519-16180640,
16181073-16181138,16182202-16182270,16182989-16183157
Length = 222
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 101 LLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
L+GNK D E R V EEG + GC F E S
Sbjct: 135 LVGNKIDKEDERTVTREEGLAFAEESGCLFLESS 168
>05_05_0118 -
22504483-22504566,22504650-22504742,22504852-22504914,
22505048-22505145,22505378-22505478,22505581-22505653,
22505872-22505910,22506946-22507018
Length = 207
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 101 LLGNKRDLEHA-REVHAEEGQELSLRFGCQFYEVS 134
L+GNK D++ + R V +GQ L+ +G +F+E S
Sbjct: 116 LVGNKADMDESKRAVPTAKGQALADEYGIKFFETS 150
>10_06_0181 - 11532765-11533203,11536867-11537036
Length = 202
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 99 VTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
+ L+GNK DLE R V E+ +E + + F E S
Sbjct: 104 IMLVGNKSDLEDERAVSTEDAKEFAEKENLFFLETS 139
>09_04_0479 -
17948043-17949037,17949554-17949715,17949809-17950262,
17952895-17953326
Length = 680
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 2 KGLCKSVVVRYLTKRYIGEYSSTGDFLYQHRVAFDGVVSEVEILDTSN 49
KG+C + + + G Y GD + + ++ FD V VE+ + +N
Sbjct: 309 KGICTNTLGNFTCSCSPGSYMMNGDCMPKKKLRFDSVPVVVELQEATN 356
>09_02_0464 - 9591139-9591571,9592601-9592818
Length = 216
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 99 VTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
+ L+GNK DL H R V E+ + + R F E S
Sbjct: 120 IMLVGNKADLRHLRAVSVEDAKGFAERESTFFMETS 155
>05_06_0082 - 25425050-25425479,25426551-25426783
Length = 220
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 101 LLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
L+GNK DL H V E+G+E + F E S
Sbjct: 127 LIGNKSDLRHLVAVSTEDGKEFAEAESMYFMETS 160
>05_01_0036 + 253734-253904,255216-255707
Length = 220
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 99 VTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
+ L+GNK DL+H R V ++ + + G + E S
Sbjct: 122 IMLVGNKTDLKHLRAVATDDAHKFAEAEGLSYIETS 157
>01_06_0186 + 27294973-27295211,27295610-27296045
Length = 224
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 99 VTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
V L+GNK DL H R V AE+ + + G E S
Sbjct: 127 VMLVGNKADLRHLRAVPAEDARAFAEAHGTFSMETS 162
>05_07_0127 - 27872803-27873238,27873842-27874059
Length = 217
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 99 VTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
+ L+GNK DL H R V E+ + + + F E S
Sbjct: 120 IMLVGNKADLRHLRAVSTEDAKAFAEKENTFFMETS 155
>03_01_0326 +
2535800-2535938,2536891-2536959,2537310-2537375,
2537979-2538100,2538501-2538629,2540462-2540569
Length = 210
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 101 LLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
L+GNK D R V EEG + GC F E S
Sbjct: 125 LVGNKVDKNEERMVTREEGLAFAQESGCLFLESS 158
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.133 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,662,374
Number of Sequences: 37544
Number of extensions: 132235
Number of successful extensions: 306
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 29
length of query: 232
length of database: 14,793,348
effective HSP length: 80
effective length of query: 152
effective length of database: 11,789,828
effective search space: 1792053856
effective search space used: 1792053856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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