Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002446-TA|BGIBMGA002446-PA|IPR003577|Ras small GTPase,
Ras type, IPR003579|Ras small GTPase, Rab type, IPR013753|Ras
(232 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81039-11|CAB02777.2| 181|Caenorhabditis elegans Hypothetical p... 64 1e-10
AC024853-3|ABP57809.1| 244|Caenorhabditis elegans Hypothetical ... 62 4e-10
Z54236-8|CAA90983.1| 188|Caenorhabditis elegans Hypothetical pr... 54 7e-08
AC024809-6|AAF59545.1| 213|Caenorhabditis elegans Ral (ras-rela... 48 4e-06
U56933-1|AAB66712.1| 212|Caenorhabditis elegans GTP binding pro... 48 6e-06
U56930-1|AAB03320.1| 212|Caenorhabditis elegans R-ras1 homolog ... 48 6e-06
CU457742-1|CAM36362.1| 212|Caenorhabditis elegans Hypothetical ... 48 6e-06
AF045637-1|AAK72295.1| 212|Caenorhabditis elegans R-ras related... 48 6e-06
Z35719-7|CAA84796.1| 211|Caenorhabditis elegans Hypothetical pr... 44 7e-05
U80675-1|AAB38969.1| 211|Caenorhabditis elegans GTP binding pro... 44 7e-05
Z92830-4|CAB07357.1| 203|Caenorhabditis elegans Hypothetical pr... 40 0.001
U39996-4|AAA81090.2| 266|Caenorhabditis elegans Hypothetical pr... 40 0.002
CU457742-2|CAM36363.1| 168|Caenorhabditis elegans Hypothetical ... 39 0.003
AF045637-2|AAN63433.1| 168|Caenorhabditis elegans R-ras related... 39 0.003
U97191-2|AAB52431.1| 214|Caenorhabditis elegans Uncoordinated p... 38 0.006
AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family pr... 38 0.006
AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein. 38 0.006
Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical pr... 38 0.008
M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein pro... 38 0.008
Z73103-10|CAA97427.2| 205|Caenorhabditis elegans Hypothetical p... 37 0.011
Z22178-5|CAA80155.1| 207|Caenorhabditis elegans Hypothetical pr... 37 0.011
Z11505-4|CAA77590.1| 205|Caenorhabditis elegans Hypothetical pr... 37 0.014
U28733-4|AAA68305.2| 125|Caenorhabditis elegans Di-ras/rig/noey... 37 0.014
U40942-7|AAC47067.2| 218|Caenorhabditis elegans Hypothetical pr... 36 0.025
U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein. 35 0.043
U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein. 35 0.043
U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family pro... 35 0.043
U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family pro... 35 0.043
AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein. 35 0.043
Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical pr... 34 0.075
U43283-2|AAC69020.1| 205|Caenorhabditis elegans Rab family prot... 34 0.075
U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical pr... 33 0.17
AF067623-4|AAC17556.2| 393|Caenorhabditis elegans Hypothetical ... 33 0.23
Z79601-4|CAB01884.1| 210|Caenorhabditis elegans Hypothetical pr... 32 0.40
AL110500-4|CAB54484.1| 215|Caenorhabditis elegans Hypothetical ... 31 0.70
AB112930-1|BAD07035.1| 215|Caenorhabditis elegans Rab27 protein. 31 0.70
U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family prot... 30 1.2
U97592-7|AAB52874.2| 332|Caenorhabditis elegans Sperm-specific ... 29 2.8
AF098999-2|AAC68728.3| 369|Caenorhabditis elegans Hypothetical ... 29 3.7
AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family pr... 29 3.7
AF000192-2|AAB52888.1| 196|Caenorhabditis elegans Rab family pr... 29 3.7
AB162902-1|BAD32698.1| 196|Caenorhabditis elegans Rab37 protein. 29 3.7
Z81061-6|CAB02938.1| 341|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z81039-12|CAB02780.1| 341|Caenorhabditis elegans Hypothetical p... 27 8.7
>Z81039-11|CAB02777.2| 181|Caenorhabditis elegans Hypothetical
protein C25D7.7 protein.
Length = 181
Score = 63.7 bits (148), Expect = 1e-10
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
Query: 3 GLCKSVV-VRYLTKRYIGEYSSTGDFLYQHRVAFDGVVSEVEILDTSNCAIRGCLAE-HV 60
G+ KS + V++++ +I +Y T + Y+ + DG S +EILDT+ + + ++
Sbjct: 13 GVGKSALTVQFVSSTFIEKYDPTIEDFYRKEIEVDGQPSVLEILDTAGTEQFSSMRDLYI 72
Query: 61 RWGDAFAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEEGQ 120
+ G F VVYS+ + L+GNK DL H R+V +EEG
Sbjct: 73 KNGQGFVVVYSITSQQTFHDIRNMKEQIVRVKGSENVPILLVGNKCDLSHQRQVRSEEGL 132
Query: 121 ELSLRFGCQFYEVS 134
L+ + C F E S
Sbjct: 133 ALAESWSCPFTECS 146
>AC024853-3|ABP57809.1| 244|Caenorhabditis elegans Hypothetical
protein Y71F9AR.2 protein.
Length = 244
Score = 61.7 bits (143), Expect = 4e-10
Identities = 44/138 (31%), Positives = 61/138 (44%), Gaps = 5/138 (3%)
Query: 1 MKGLCKSVV-VRYLTKRYIGEYSSTGDFLYQHRVAFDGVVSEVEILDTSNCAIRGCLAEH 59
M G KS + V+Y+TKR+IGEY ST + Y + G V ++DT A + +
Sbjct: 17 MAGSGKSAIAVKYITKRFIGEYDSTLEDNYCRQETVGGQSLMVWMMDTVENATKDEM-RW 75
Query: 60 VRWGDAFAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCA---AVTLLGNKRDLEHAREVHA 116
+ W D + VVY V C L+GNK DLE R+V
Sbjct: 76 IAWADVYVVVYDVTSQLSFQYAEGILERISRHEHVLCPREHRTLLVGNKTDLERYRQVSE 135
Query: 117 EEGQELSLRFGCQFYEVS 134
EG+ L+ + QF E S
Sbjct: 136 TEGERLASQHKAQFAECS 153
>Z54236-8|CAA90983.1| 188|Caenorhabditis elegans Hypothetical
protein C27B7.8 protein.
Length = 188
Score = 54.4 bits (125), Expect = 7e-08
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 3 GLCKSVV-VRYLTKRYIGEYSSTGDFLYQHRVAFDGVVSEVEILDTSNCAIRGCLAE-HV 60
G+ KS + V+++ ++ +Y T + Y+ +V DG +EILDT+ + + ++
Sbjct: 13 GVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYM 72
Query: 61 RWGDAFAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEEGQ 120
+ G F +VYS+ + L+GNK DLE R V ++GQ
Sbjct: 73 KNGQGFVLVYSITAQSTFNDLMDLRDQILRVKDTDEVPMILVGNKCDLEDERVVGKDQGQ 132
Query: 121 ELSLRFGCQFYEVS 134
L+ +FG F E S
Sbjct: 133 NLARQFGSAFLETS 146
>AC024809-6|AAF59545.1| 213|Caenorhabditis elegans Ral (ras-related
gtpase) homologprotein 1 protein.
Length = 213
Score = 48.4 bits (110), Expect = 4e-06
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Query: 3 GLCKSVV-VRYLTKRYIGEYSSTGDFLYQHRVAFDGVVSEVEILDTSNCAIRGCLAE-HV 60
G+ KS + ++++ ++ EY T Y+ +V DG ++ILDT+ + + +
Sbjct: 27 GVGKSALTLQFMYDEFVEEYEPTKADSYRKKVVLDGEECSIDILDTAGQEDYSAIRDNYY 86
Query: 61 RWGDAFAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAA-VTLLGNKRDLEHAREVHAEEG 119
R G+ F V+S+ + + L+GNK D+ R V AE
Sbjct: 87 RSGEGFICVFSILDMESFEATNEFREQILRVKNSDSSVPIVLVGNKGDMRDQRVVSAELC 146
Query: 120 QELSLRFGCQFYEVS 134
++ + ++GC + E S
Sbjct: 147 RQRAEQWGCHYVETS 161
>U56933-1|AAB66712.1| 212|Caenorhabditis elegans GTP binding
protein protein.
Length = 212
Score = 48.0 bits (109), Expect = 6e-06
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
Query: 3 GLCKSVV-VRYLTKRYIGEYSSTGDFLYQHRVAFDGVVSEVEILDTSNCAIRGCLAE-HV 60
G+ KS + ++++ + ++ +Y T + Y + D + ++EILDT+ + E ++
Sbjct: 27 GVGKSALTIQFIQRYFVQDYDPTIEDSYTKQCFVDEDLCKLEILDTAGQEEFSTMREQYL 86
Query: 61 RWGDAFAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEEGQ 120
R G F +V++V + L+GNK DLE+ R V E +
Sbjct: 87 RTGSGFLIVFAVTDRNSFEEVKKLHELICRIKDRDDFPIILVGNKADLENERHVARHEAE 146
Query: 121 ELSLRFGCQFYEVS 134
EL+ R + E S
Sbjct: 147 ELAHRLSIPYLECS 160
>U56930-1|AAB03320.1| 212|Caenorhabditis elegans R-ras1 homolog
protein.
Length = 212
Score = 48.0 bits (109), Expect = 6e-06
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
Query: 3 GLCKSVV-VRYLTKRYIGEYSSTGDFLYQHRVAFDGVVSEVEILDTSNCAIRGCLAE-HV 60
G+ KS + ++++ + ++ +Y T + Y + D + ++EILDT+ + E ++
Sbjct: 27 GVGKSALTIQFIQRYFVQDYDPTIEDSYTKQCFVDEDLCKLEILDTAGQEEFSTMREQYL 86
Query: 61 RWGDAFAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEEGQ 120
R G F +V++V + L+GNK DLE+ R V E +
Sbjct: 87 RTGSGFLIVFAVTDRNSFEEVKKLHELICRIKDRDDFPIILVGNKADLENERHVARHEAE 146
Query: 121 ELSLRFGCQFYEVS 134
EL+ R + E S
Sbjct: 147 ELAHRLSIPYLECS 160
>CU457742-1|CAM36362.1| 212|Caenorhabditis elegans Hypothetical
protein C44C11.1a protein.
Length = 212
Score = 48.0 bits (109), Expect = 6e-06
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
Query: 3 GLCKSVV-VRYLTKRYIGEYSSTGDFLYQHRVAFDGVVSEVEILDTSNCAIRGCLAE-HV 60
G+ KS + ++++ + ++ +Y T + Y + D + ++EILDT+ + E ++
Sbjct: 27 GVGKSALTIQFIQRYFVQDYDPTIEDSYTKQCFVDEDLCKLEILDTAGQEEFSTMREQYL 86
Query: 61 RWGDAFAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEEGQ 120
R G F +V++V + L+GNK DLE+ R V E +
Sbjct: 87 RTGSGFLIVFAVTDRNSFEEVKKLHELICRIKDRDDFPIILVGNKADLENERHVARHEAE 146
Query: 121 ELSLRFGCQFYEVS 134
EL+ R + E S
Sbjct: 147 ELAHRLSIPYLECS 160
>AF045637-1|AAK72295.1| 212|Caenorhabditis elegans R-ras related
protein 1, isoform a protein.
Length = 212
Score = 48.0 bits (109), Expect = 6e-06
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
Query: 3 GLCKSVV-VRYLTKRYIGEYSSTGDFLYQHRVAFDGVVSEVEILDTSNCAIRGCLAE-HV 60
G+ KS + ++++ + ++ +Y T + Y + D + ++EILDT+ + E ++
Sbjct: 27 GVGKSALTIQFIQRYFVQDYDPTIEDSYTKQCFVDEDLCKLEILDTAGQEEFSTMREQYL 86
Query: 61 RWGDAFAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEEGQ 120
R G F +V++V + L+GNK DLE+ R V E +
Sbjct: 87 RTGSGFLIVFAVTDRNSFEEVKKLHELICRIKDRDDFPIILVGNKADLENERHVARHEAE 146
Query: 121 ELSLRFGCQFYEVS 134
EL+ R + E S
Sbjct: 147 ELAHRLSIPYLECS 160
>Z35719-7|CAA84796.1| 211|Caenorhabditis elegans Hypothetical
protein F17C8.4 protein.
Length = 211
Score = 44.4 bits (100), Expect = 7e-05
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 1/129 (0%)
Query: 7 SVVVRYLTKRYIGEYSSTGDFLYQHRVAFDGVVSEVEILDTSNCAIRGCLAE-HVRWGDA 65
S+ +++ K+++ Y T + Y DG +++LDT+ + E ++R G
Sbjct: 32 SLTIQFFQKQFVDYYDPTIEDQYIQHCEIDGNWVIMDVLDTAGQEEFSAMREQYIRGGRG 91
Query: 66 FAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEEGQELSLR 125
F +V+SV V L+ NK DL + R V +EG+EL+ +
Sbjct: 92 FLLVFSVTERKSFEEAHKLYNQVLRVKDRSEYPVLLVANKVDLINQRVVSEQEGRELAAQ 151
Query: 126 FGCQFYEVS 134
+ E S
Sbjct: 152 LKLMYIETS 160
>U80675-1|AAB38969.1| 211|Caenorhabditis elegans GTP binding
protein protein.
Length = 211
Score = 44.4 bits (100), Expect = 7e-05
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 1/129 (0%)
Query: 7 SVVVRYLTKRYIGEYSSTGDFLYQHRVAFDGVVSEVEILDTSNCAIRGCLAE-HVRWGDA 65
S+ +++ K+++ Y T + Y DG +++LDT+ + E ++R G
Sbjct: 32 SLTIQFFQKQFVDYYDPTIEDQYIQHCEIDGNWVIMDVLDTAGQEEFSAMREQYIRGGRG 91
Query: 66 FAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEEGQELSLR 125
F +V+SV V L+ NK DL + R V +EG+EL+ +
Sbjct: 92 FLLVFSVTERKSFEEAHKLYNQVLRVKDRSEYPVLLVANKVDLINQRVVSEQEGRELAAQ 151
Query: 126 FGCQFYEVS 134
+ E S
Sbjct: 152 LKLMYIETS 160
>Z92830-4|CAB07357.1| 203|Caenorhabditis elegans Hypothetical
protein F11A5.4 protein.
Length = 203
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 99 VTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
+ L+GNK DLE REV EEG+ + FG F E+S
Sbjct: 114 IVLIGNKSDLEADREVRKEEGEAFAREFGLIFMEIS 149
>U39996-4|AAA81090.2| 266|Caenorhabditis elegans Hypothetical
protein C56E6.2 protein.
Length = 266
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Query: 39 VSEVEILDTSNCAIRGCLAE-HVRWGDAFAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCA 97
V +++ DT+ C+ ++R DA +VY V A
Sbjct: 104 VVRLQVWDTAGQERFRCMVPMYMRNADAALIVYDVTDRNTFEDVEKWLKDLDRSSGTEDA 163
Query: 98 AVTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
V L+GNK DL REV EG+ ++ + +F+E+S
Sbjct: 164 NVYLIGNKTDLVEKREVTEAEGKAMAAKINAKFFELS 200
>CU457742-2|CAM36363.1| 168|Caenorhabditis elegans Hypothetical
protein C44C11.1b protein.
Length = 168
Score = 39.1 bits (87), Expect = 0.003
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 3 GLCKSVV-VRYLTKRYIGEYSSTGDFLYQHRVAFDGVVSEVEILDTSNCAIRGCLAE-HV 60
G+ KS + ++++ + ++ +Y T + Y + D + ++EILDT+ + E ++
Sbjct: 27 GVGKSALTIQFIQRYFVQDYDPTIEDSYTKQCFVDEDLCKLEILDTAGQEEFSTMREQYL 86
Query: 61 RWGDAFAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAE 117
R G F +V++V + L+GNK DLE+ R V E
Sbjct: 87 RTGSGFLIVFAVTDRNSFEEVKKLHELICRIKDRDDFPIILVGNKADLENERHVSFE 143
>AF045637-2|AAN63433.1| 168|Caenorhabditis elegans R-ras related
protein 1, isoform b protein.
Length = 168
Score = 39.1 bits (87), Expect = 0.003
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 3 GLCKSVV-VRYLTKRYIGEYSSTGDFLYQHRVAFDGVVSEVEILDTSNCAIRGCLAE-HV 60
G+ KS + ++++ + ++ +Y T + Y + D + ++EILDT+ + E ++
Sbjct: 27 GVGKSALTIQFIQRYFVQDYDPTIEDSYTKQCFVDEDLCKLEILDTAGQEEFSTMREQYL 86
Query: 61 RWGDAFAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAE 117
R G F +V++V + L+GNK DLE+ R V E
Sbjct: 87 RTGSGFLIVFAVTDRNSFEEVKKLHELICRIKDRDDFPIILVGNKADLENERHVSFE 143
>U97191-2|AAB52431.1| 214|Caenorhabditis elegans Uncoordinated
protein 108 protein.
Length = 214
Score = 37.9 bits (84), Expect = 0.006
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 4/135 (2%)
Query: 3 GLCKS-VVVRYLTKRYIGEYSSTGDFLYQHR-VAFDGVVSEVEILDTSNC-AIRGCLAEH 59
G+ KS +++++ KR+ + T + R V DG +++I DT+ + R +
Sbjct: 16 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSITRSY 75
Query: 60 VRWGDAFAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEEG 119
R +VY + + L+GNK DLE REV EEG
Sbjct: 76 YRGAAGALLVYDITRRDTFNHLTSWLEDARQHSNSNMV-IMLIGNKSDLEARREVKREEG 134
Query: 120 QELSLRFGCQFYEVS 134
+ + G F E S
Sbjct: 135 EAFAREHGLVFMETS 149
>AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family
protein 8 protein.
Length = 211
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 101 LLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
++GNK D+E REV + G++L++ +G +F E S
Sbjct: 118 IIGNKCDIEERREVSRDRGEQLAIEYGTKFLETS 151
>AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein.
Length = 211
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 101 LLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
++GNK D+E REV + G++L++ +G +F E S
Sbjct: 118 IIGNKCDIEERREVSRDRGEQLAIEYGTKFLETS 151
>Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical
protein ZK792.6 protein.
Length = 184
Score = 37.5 bits (83), Expect = 0.008
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
Query: 3 GLCKSVV-VRYLTKRYIGEYSSTGDFLYQHRVAFDGVVSEVEILDTSNCAIRGCLA-EHV 60
G+ KS + ++ + ++ EY T + Y+ +V DG ++ILDT+ + +++
Sbjct: 13 GVGKSALTIQLIQNHFVEEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM 72
Query: 61 RWGDAFAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEEGQ 120
R G+ F +V++V + L+GNK DL +R V
Sbjct: 73 RTGEGFLLVFAVNEAKSFENVANYREQIRRVKDSDDVPMVLVGNKCDLS-SRSVDFRTVS 131
Query: 121 ELSLRFG 127
E + +G
Sbjct: 132 ETAKGYG 138
>M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein
protein.
Length = 187
Score = 37.5 bits (83), Expect = 0.008
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
Query: 3 GLCKSVV-VRYLTKRYIGEYSSTGDFLYQHRVAFDGVVSEVEILDTSNCAIRGCLA-EHV 60
G+ KS + ++ + ++ EY T + Y+ +V DG ++ILDT+ + +++
Sbjct: 16 GVGKSALTIQLIQNHFVEEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM 75
Query: 61 RWGDAFAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEEGQ 120
R G+ F +V++V + L+GNK DL +R V
Sbjct: 76 RTGEGFLLVFAVNEAKSFENVANYREQIRRVKDSDDVPMVLVGNKCDLS-SRSVDFRTVS 134
Query: 121 ELSLRFG 127
E + +G
Sbjct: 135 ETAKGYG 141
>Z73103-10|CAA97427.2| 205|Caenorhabditis elegans Hypothetical
protein C08F8.7 protein.
Length = 205
Score = 37.1 bits (82), Expect = 0.011
Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 3/134 (2%)
Query: 3 GLCKSVV-VRYLTKRYIGEYSSTGDFLYQHRVAFDGVVSEVEILDTSNCA-IRGCLAEHV 60
G+ KS + ++Y+ ++ Y +T + Y+ D + +EILDT+ G +
Sbjct: 13 GVGKSALTLQYVQGIFVHTYDATIEDSYRKLSKVDAENARLEILDTAGTEQFTGMRETYY 72
Query: 61 RWGDAFAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEEGQ 120
R F +V+S+ + L+GNK DL R+V E
Sbjct: 73 RTAQGFVLVFSLAETSTFENLKQTFTDIIAIRGKEVPMI-LVGNKSDLAETRQVDESEAH 131
Query: 121 ELSLRFGCQFYEVS 134
+ + ++E S
Sbjct: 132 NFAEKLKIPYFETS 145
>Z22178-5|CAA80155.1| 207|Caenorhabditis elegans Hypothetical
protein F54C8.5 protein.
Length = 207
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 99 VTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
+ ++GNK DL R V AEEG+EL+ ++ +F E++
Sbjct: 121 IVIVGNKTDLSTQRVVRAEEGEELARQWDAKFVEIT 156
>Z11505-4|CAA77590.1| 205|Caenorhabditis elegans Hypothetical
protein F59B2.7 protein.
Length = 205
Score = 36.7 bits (81), Expect = 0.014
Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 7/132 (5%)
Query: 7 SVVVRYLTKRYIGEYSST-G-DFLYQHRVAFDGVVSEVEILDTSNCA-IRGCLAEHVRWG 63
S++ R++ + Y +T G DFL + D + +++ DT+ R + ++R
Sbjct: 26 SIITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTI-RLQLWDTAGQERFRSLIPSYIRDS 84
Query: 64 DAFAVVYSVCXXXXXXXXXXXXXXXXXXXXXGC-AAVTLLGNKRDLEHAREVHAEEGQEL 122
VVY + GC + L+GNK DL R+V E+G++
Sbjct: 85 SVAVVVYDI--TNANSFHQTTKWVDDVRNERGCDVIIVLVGNKTDLADKRQVSTEDGEKK 142
Query: 123 SLRFGCQFYEVS 134
+ F E S
Sbjct: 143 ARDLNVMFIETS 154
>U28733-4|AAA68305.2| 125|Caenorhabditis elegans Di-ras/rig/noey2
ras-like proteinhomolog protein 1 protein.
Length = 125
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 63 GDAFAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAA--VTLLGNKRDLEHAREVHAEEGQ 120
G+AF ++YSV A + L+GNK+D E REV + GQ
Sbjct: 9 GNAFILIYSVTNKQSFAELVPIIEMMKEVKGNAIAETPIMLVGNKKDEESKREVSSNSGQ 68
Query: 121 ELSLRFGCQFYEVS 134
+++ C F E S
Sbjct: 69 KVATNMECGFIETS 82
>U40942-7|AAC47067.2| 218|Caenorhabditis elegans Hypothetical
protein K02E10.1 protein.
Length = 218
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 97 AAVTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
A + L+GNK D++ R+V + ++L+ R G YEVS
Sbjct: 113 AVLMLVGNKADMDQERKVDFDRAEKLASRLGVSLYEVS 150
>U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 97 AAVTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
A V L+GNK D++ R V + G++L+ + G +F+E S
Sbjct: 128 AQVVLVGNKCDMDSERVVSMDRGRQLADQLGLEFFETS 165
>U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 97 AAVTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
A V L+GNK D++ R V + G++L+ + G +F+E S
Sbjct: 128 AQVVLVGNKCDMDSERVVSMDRGRQLADQLGLEFFETS 165
>U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family
protein 3, isoform b protein.
Length = 219
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 97 AAVTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
A V L+GNK D++ R V + G++L+ + G +F+E S
Sbjct: 128 AQVVLVGNKCDMDSERVVSMDRGRQLADQLGLEFFETS 165
>U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family
protein 3, isoform a protein.
Length = 233
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 97 AAVTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
A V L+GNK D++ R V + G++L+ + G +F+E S
Sbjct: 142 AQVVLVGNKCDMDSERVVSMDRGRQLADQLGLEFFETS 179
>AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein.
Length = 219
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 97 AAVTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
A V L+GNK D++ R V + G++L+ + G +F+E S
Sbjct: 128 AQVVLVGNKCDMDSERVVSMDRGRQLADQLGLEFFETS 165
>Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical
protein F11A5.3 protein.
Length = 201
Score = 34.3 bits (75), Expect = 0.075
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 99 VTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
+ L+GNK DL+ R+V EEG+ + + G F E S
Sbjct: 114 IMLIGNKSDLKAVRDVTTEEGEAFAKKNGLTFMETS 149
>U43283-2|AAC69020.1| 205|Caenorhabditis elegans Rab family protein
6.2 protein.
Length = 205
Score = 34.3 bits (75), Expect = 0.075
Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 5/131 (3%)
Query: 7 SVVVRYLTKRYIGEYSST-G-DFLYQHRVAFDGVVSEVEILDTSNCA-IRGCLAEHVRWG 63
S++ R++ + Y +T G DFL + D V +++ DT+ R + ++R
Sbjct: 25 SLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV-RLQLWDTAGQERFRSLIPSYIRDS 83
Query: 64 DAFAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEEGQELS 123
VVY + + L+GNK DL R+V +EG+ +
Sbjct: 84 TVAVVVYDITNSNSFHQTSKWIDDVRTERGSD-VIIMLVGNKTDLSDKRQVTTDEGERKA 142
Query: 124 LRFGCQFYEVS 134
F E S
Sbjct: 143 KELNVMFIETS 153
>U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical
protein F20D6.8 protein.
Length = 370
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 101 LLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
L+GNK DL+ + + EG+ ++ F C F EVS
Sbjct: 284 LIGNKCDLKRNQVISTNEGKSVARTFKCDFLEVS 317
>AF067623-4|AAC17556.2| 393|Caenorhabditis elegans Hypothetical
protein T26C12.3 protein.
Length = 393
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 99 VTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
+ L+G+K+D+ R V + EGQ+L+ G F EVS
Sbjct: 324 IVLVGSKKDMRVKRVVTSFEGQQLARTLGIPFLEVS 359
>Z79601-4|CAB01884.1| 210|Caenorhabditis elegans Hypothetical
protein K09A9.2 protein.
Length = 210
Score = 31.9 bits (69), Expect = 0.40
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 98 AVTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
A+ L+GNK DLE R+V EE + + G F E S
Sbjct: 118 AIFLIGNKADLEDQRDVPYEEAKAFAEENGLTFLECS 154
>AL110500-4|CAB54484.1| 215|Caenorhabditis elegans Hypothetical
protein Y87G2A.4 protein.
Length = 215
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 99 VTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
+ + GNK DLE+ R+V ++L+ + G ++E S
Sbjct: 125 IIICGNKADLENRRQVSTARAKQLADQLGLPYFETS 160
>AB112930-1|BAD07035.1| 215|Caenorhabditis elegans Rab27 protein.
Length = 215
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 99 VTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
+ + GNK DLE+ R+V ++L+ + G ++E S
Sbjct: 125 IIICGNKADLENRRQVSTARAKQLADQLGLPYFETS 160
>U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family protein
10 protein.
Length = 201
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 101 LLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
+LGNK D+ R V E G++++ G F+E S
Sbjct: 119 ILGNKCDMSDRRVVSRERGEKIAQDHGISFHETS 152
>U97592-7|AAB52874.2| 332|Caenorhabditis elegans Sperm-specific
family, class rprotein 2 protein.
Length = 332
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 7 SVVVRYLTKRYIGEYSSTGDFLYQHRVAFDGVVSEVEILDTSNCAIRGCLAEHVRWGDAF 66
+++ RYL + +Y T + L+ GV ++ILDT N + AF
Sbjct: 32 NIIRRYLYNEFSSKYKETIEDLHSREFRIQGVPLPLDILDT-NFNFPDMRRLSIASASAF 90
Query: 67 AVVYSV 72
+V+SV
Sbjct: 91 LLVFSV 96
>AF098999-2|AAC68728.3| 369|Caenorhabditis elegans Hypothetical
protein W04C9.5 protein.
Length = 369
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/69 (28%), Positives = 27/69 (39%)
Query: 66 FAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEEGQELSLR 125
+A+VY+V A + L+GNK DL+ V EG L+
Sbjct: 247 YAIVYNVDNRESFVCATDLLSRLLNRKIARGANIILIGNKIDLKRNTVVSKMEGACLAKV 306
Query: 126 FGCQFYEVS 134
C F EVS
Sbjct: 307 HKCNFVEVS 315
>AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family
protein 11.1 protein.
Length = 211
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 99 VTLLGNKRDLEHAREVHAEEGQELSLRFGCQFYEVS 134
+ L+GNK DL H R V +E + + R F E S
Sbjct: 119 IMLVGNKSDLRHLRAVPTDEAKIYAERNQLSFIETS 154
>AF000192-2|AAB52888.1| 196|Caenorhabditis elegans Rab family
protein 37 protein.
Length = 196
Score = 28.7 bits (61), Expect = 3.7
Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 6/130 (4%)
Query: 8 VVVRYLTKRYIGE-YSSTGDFLYQHRVAFDGVVS-EVEILDTSNCA-IRGCLAEHVRWGD 64
+++RY ++ + ST Y++++ G +++I DT+ R + R D
Sbjct: 18 LLIRYKDGAFLNNNFISTVGIDYRNKLITMGDKKVKLQIWDTAGQERFRSVTTSYYRDAD 77
Query: 65 AFAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEEGQELSL 124
A +VY + VTL+GNK DL R V +EG+ L+
Sbjct: 78 ALLLVYDIANRASFENCRNWLSQIKEYGKEA-VQVTLVGNKCDL--PRAVPTDEGKRLAE 134
Query: 125 RFGCQFYEVS 134
+ F E S
Sbjct: 135 AYQIPFMETS 144
>AB162902-1|BAD32698.1| 196|Caenorhabditis elegans Rab37 protein.
Length = 196
Score = 28.7 bits (61), Expect = 3.7
Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 6/130 (4%)
Query: 8 VVVRYLTKRYIGE-YSSTGDFLYQHRVAFDGVVS-EVEILDTSNCA-IRGCLAEHVRWGD 64
+++RY ++ + ST Y++++ G +++I DT+ R + R D
Sbjct: 18 LLIRYKDGAFLNNNFISTVGIDYRNKLITMGDKKVKLQIWDTAGQERFRSVTTSYYRDAD 77
Query: 65 AFAVVYSVCXXXXXXXXXXXXXXXXXXXXXGCAAVTLLGNKRDLEHAREVHAEEGQELSL 124
A +VY + VTL+GNK DL R V +EG+ L+
Sbjct: 78 ALLLVYDIANRASFENCRNWLSQIKEYGKEA-VQVTLVGNKCDL--PRAVPTDEGKRLAE 134
Query: 125 RFGCQFYEVS 134
+ F E S
Sbjct: 135 AYQIPFMETS 144
>Z81061-6|CAB02938.1| 341|Caenorhabditis elegans Hypothetical
protein C25D7.12 protein.
Length = 341
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 173 SKVGLSNKEYTAESCKGTRVRSVA--AVPRRKLAAYSVSKVIGTIFGKNSKSVRKKRPSL 230
SK G S++ ++S K ++ +SV AVP ++A S SK + K+SKS R +R S
Sbjct: 100 SKSGHSSRGKPSKS-KKSKSKSVRPLAVPGARVAPNSESKKLRRDKDKSSKSERSRRSSK 158
Query: 231 S 231
S
Sbjct: 159 S 159
>Z81039-12|CAB02780.1| 341|Caenorhabditis elegans Hypothetical
protein C25D7.12 protein.
Length = 341
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 173 SKVGLSNKEYTAESCKGTRVRSVA--AVPRRKLAAYSVSKVIGTIFGKNSKSVRKKRPSL 230
SK G S++ ++S K ++ +SV AVP ++A S SK + K+SKS R +R S
Sbjct: 100 SKSGHSSRGKPSKS-KKSKSKSVRPLAVPGARVAPNSESKKLRRDKDKSSKSERSRRSSK 158
Query: 231 S 231
S
Sbjct: 159 S 159
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.133 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,891,920
Number of Sequences: 27539
Number of extensions: 108903
Number of successful extensions: 279
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 44
length of query: 232
length of database: 12,573,161
effective HSP length: 79
effective length of query: 153
effective length of database: 10,397,580
effective search space: 1590829740
effective search space used: 1590829740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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