Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002445-TA|BGIBMGA002445-PA|IPR002466|Adenosine
deaminase/editase
(411 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo... 61 3e-10
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 27 3.7
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 27 3.7
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 27 3.7
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 27 4.8
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 27 4.8
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 27 6.4
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 27 6.4
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 27 6.4
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 26 8.4
>SPBC16A3.06 |||tRNA specific adenosine deaminase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 60.9 bits (141), Expect = 3e-10
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 10/129 (7%)
Query: 18 LKTYEQLPKKGKP-----ADDEWTVLSCIVKYETEHDTIEVLSLGTGSKCI--GATKMSP 70
L +++L + GKP EWT L+ +V + + + L TG KC G K
Sbjct: 21 LNKFDELARHGKPIIRANGVREWTTLAGVVIQKKMENEFICVCLATGVKCTPAGIIKNEQ 80
Query: 71 LGDLLNDSHAEVFARRGFIHYLIQN---IEKATNNLDSIFIKTDSKLKLKDSIEFIFYSS 127
LG +L+D HAE+ A R F L+++ I+++ + + + + K L ++ Y S
Sbjct: 81 LGSVLHDCHAEILALRCFNRLLLEHCILIKESKKDTWLLEVADNGKFTLNSNLLIHLYVS 140
Query: 128 QLPCGDASI 136
+ PCGDAS+
Sbjct: 141 ECPCGDASM 149
Score = 52.0 bits (119), Expect = 1e-07
Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 29/214 (13%)
Query: 196 DYHVLGQVRTKPGRGDRTLS--VSCSDKIARWVHLGIHGALLDLICEPVYIKHFIFGASV 253
D+ +LG VRTKPGR D +S SC+DK+A +L I + LICEP+Y+ + V
Sbjct: 177 DFGLLGIVRTKPGRPDAPVSWSKSCTDKLAAKQYLSILNSQTSLICEPIYLSCVVLYKKV 236
Query: 254 PYCEESLNRAI-----LKRSNEFNNTRAPKFY---------QSFITFSDIKSEGKYRPAP 299
+ +++RA EF P ++ ++F+ + K +
Sbjct: 237 -IVKSAIDRAFGPFGRCAPLAEFGEKDNPYYFHPFTVLETDENFLYSRPLNQAEKTATST 295
Query: 300 GSIVWINLTNPILEVAVQGRKLGLTKKGKSISPDASLIISKYNIYKIFLKLLNRNKELKV 359
++WI +V G K G K K + +LI K ++N +L
Sbjct: 296 NVLIWIGDKMQCTQVIHNGIKAG--TKAKDVEKSQTLICRK--------SMMNLLHQLSQ 345
Query: 360 SIFGDESIENIPYNKMKIKSKQYRDRWENLKENF 393
S+ +++ + K+ IK Q + N+ +N+
Sbjct: 346 SLTNEKNY--YEWKKLNIKRCQQKQILRNILKNW 377
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 27.5 bits (58), Expect = 3.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 2 PDNLSSVCVDNIVEKCLKTYEQLPKKGKPADDEWTV 37
PD++SSV VE ++E+L PA+ E+T+
Sbjct: 684 PDSISSVRSHTAVESPRSSFEELQPSEIPAESEFTL 719
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 27.5 bits (58), Expect = 3.7
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 95 NIEKATNNLDSIFIKTDSKLKLKDSIEFIFYSSQLPCGDASII--PKNGEEIEE 146
+IE AT+ + I K K K + + SSQ+P D+S + P EIEE
Sbjct: 809 SIEDATDPQTILAILKQKKAKKKHAAREMEISSQIPSNDSSNVQTPTAESEIEE 862
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 242 VYIKHFIFGASVPY---CEESLNRAILKRSNEFNNTRAPKFYQSFITFSDIKSEGKY 295
+Y+K + + Y + +LN A+ +N F+ ++ F+ S +T E KY
Sbjct: 457 MYVKDTLLSLDMAYKALSQNNLNEALSYSNNAFSKSQEALFHPSMVTTIYFPDESKY 513
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 27.1 bits (57), Expect = 4.8
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 338 ISKYNIYKIFLKLLNRNKELKVSIFGDESIENIPYNKMKIKSKQYRDRWENLKENF---F 394
+ + N+ K K++N ELK +ES + + + K + ++R + L +N
Sbjct: 105 VGELNLLKELCKMINEEPELKAIEDTEESKKQLQREESKEADRLLQERIDVLCKNLLDKL 164
Query: 395 RIWTVKADMWD 405
IWT + DM D
Sbjct: 165 SIWT-ETDMSD 174
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 250 GASVPYCEESLNRAILKRSNEFNNT 274
G S EESLNR I KRS+ N+T
Sbjct: 433 GLSSSTSEESLNRHISKRSSNSNDT 457
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 26.6 bits (56), Expect = 6.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 21 YEQLPKKGKPADDEWTVLSCIVKYETEHDTIEVLS 55
+E P GK + E SCI Y TE T+E +S
Sbjct: 131 WEWSPPSGKLLEYECKNYSCIAVYSTEDCTLERIS 165
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 26.6 bits (56), Expect = 6.4
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 324 TKKGKSISPDASLIISKYNIYKIFLK-LLNRNKELKVSIFGDESIEN 369
TK+ +S L YNI++I L+ +++ KE+K S++ D+S+ N
Sbjct: 73 TKQNSCLSRFRELA-QTYNIHEINLEEYVSQIKEVKQSLYSDDSVFN 118
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 26.6 bits (56), Expect = 6.4
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 41 IVKYETEHDTIEVLSLGTGSKCIGATKMSPLGDLLNDSHAEVFARRGFIHYLIQNIEKAT 100
++K D+ + L L C K P+ + ++DS E++ F+ + + N+E T
Sbjct: 258 VMKLLIPEDSNDSLDLAKRRSC----KTPPMIEFVSDSSGELWWHAPFLFFSVLNVEDFT 313
Query: 101 N 101
N
Sbjct: 314 N 314
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 26.2 bits (55), Expect = 8.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 325 KKGKSISPDASLIISKYNIYKIFLKLLNRNK 355
+ G + P A+ +I + + +K FL+ NRN+
Sbjct: 403 RNGPDVHPGANYVIDRESGFKRFLRFGNRNR 433
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.137 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,621
Number of Sequences: 5004
Number of extensions: 90296
Number of successful extensions: 216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 12
length of query: 411
length of database: 2,362,478
effective HSP length: 74
effective length of query: 337
effective length of database: 1,992,182
effective search space: 671365334
effective search space used: 671365334
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)
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