Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002445-TA|BGIBMGA002445-PA|IPR002466|Adenosine
deaminase/editase
(411 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1633 + 34928139-34928511,34928700-34928774,34929385-349294... 73 4e-13
06_03_1021 - 26945479-26945825,26946365-26946704 33 0.32
04_03_0392 + 15327017-15327370 31 1.3
10_01_0105 + 1287423-1289924 31 1.7
09_02_0318 - 7191763-7191879,7192375-7192494,7192568-7192666,719... 31 1.7
04_03_0390 + 15311748-15311753,15312172-15312438 31 1.7
04_03_0334 - 14578017-14578370 31 1.7
06_03_1017 - 26923329-26923685 31 2.2
04_03_0393 + 15335298-15335651 31 2.2
06_03_0976 - 26475660-26476013 30 3.9
04_03_0335 - 14586917-14587270 30 3.9
04_03_0337 - 14602158-14602511 29 5.1
05_07_0037 - 27229351-27230037,27230305-27230330,27230536-27231961 29 9.0
03_05_1111 - 30479793-30479823,30479887-30479978,30480261-304804... 29 9.0
>04_04_1633 +
34928139-34928511,34928700-34928774,34929385-34929483,
34929736-34929908,34929990-34930066,34930182-34930301,
34930385-34930472,34930610-34930716,34930814-34930871
Length = 389
Score = 72.9 bits (171), Expect = 4e-13
Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 18 LKTYEQLPKKGKPADDEWTVLSCIVKYETEHD--TIEVLSLGTGSKCIGATKMSPLGDLL 75
L+ Y LPKKGKP E TVL+ + + D + VLSL TG+KC+GA +++ GDL+
Sbjct: 32 LQHYNSLPKKGKPQGRESTVLAAFLLSTPQQDPRNLTVLSLATGTKCLGAARLNHHGDLV 91
Query: 76 NDSHAEVFARRGFIHYLIQNIEKA 99
+D+HAEV ARR + + I ++
Sbjct: 92 HDAHAEVVARRALLRLIYTEIGRS 115
Score = 70.5 bits (165), Expect = 2e-12
Identities = 63/218 (28%), Positives = 100/218 (45%), Gaps = 25/218 (11%)
Query: 200 LGQVRTKPGRGDRTLSVSCSDKIARWVHLGIHGALLDLICEPVYIKHFIFGASVP----- 254
+G V+ KPGRGD TLS+SC DKI RW +GI GALL I EP+Y+ G S
Sbjct: 151 VGFVQRKPGRGDTTLSMSCFDKITRWSVVGIQGALLSHILEPLYLSTITIGQSPTGASDG 210
Query: 255 -YCEESLNRAILKRSNEFNN-------TRAPKFYQSFITFSDI-KSEGKYRP--APGSIV 303
E ++ + + R + ++ P FY++ I + ++ G +P SI
Sbjct: 211 FSVENNIKKVLDARLSSLSSKLLLPFKLNKPLFYEAPIPPKEFQQTSGDLQPLTCGYSIC 270
Query: 304 WINLTNPILEVAVQGRKLGLTKKGKSISPDASLIISKYNIYKIFLKLLNRNKELKVSIFG 363
W + + GRK G + K + SP ++ K + + F+ + + V F
Sbjct: 271 WNKSGFHEVVLGTTGRKQGTSSKA-ACSPSTESLLCKRRLLEAFVLI----EHPLVKKFH 325
Query: 364 DESIENIPYNKMKIKSKQYRDRWENL-KENFFRIWTVK 400
E + Y ++K + +Y+ E L K FF W+ K
Sbjct: 326 REEMS---YRQIKDMAHEYQQTLELLRKAPFFSRWSAK 360
>06_03_1021 - 26945479-26945825,26946365-26946704
Length = 228
Score = 33.5 bits (73), Expect = 0.32
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 365 ESIENIPYNKMKIKSKQYRDRWENLKENFFRIWTVKAD 402
E + N+ +K++IK K +D W LKE+ WT+K++
Sbjct: 151 ELVTNVAISKVEIKEKGSKD-WVTLKESSTNTWTIKSE 187
>04_03_0392 + 15327017-15327370
Length = 117
Score = 31.5 bits (68), Expect = 1.3
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 365 ESIENIPYNKMKIKSKQYRDRWENLKENFFRIWTVKAD 402
E + N+ +++++K K +D W LKE+ WT+K+D
Sbjct: 40 ELVTNVAISEVEVKEKGGKD-WVGLKESGSNTWTLKSD 76
>10_01_0105 + 1287423-1289924
Length = 833
Score = 31.1 bits (67), Expect = 1.7
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 230 IHGALLDLICEPVYIKHF-----IFGASVPYCEESLNRAILKRSNEFNNTRAPKFYQSF- 283
I G + ICE +KH +F VP+C N L SN + + P++ QSF
Sbjct: 462 ITGQVPGSICESENMKHLDLSNNLFEGEVPHCRRMRNLRFLLLSNNSFSGKFPQWIQSFS 521
Query: 284 -ITFSDIKSEGKYRPAP 299
+ F D+ Y P
Sbjct: 522 SLVFLDLSWNMFYGSLP 538
>09_02_0318 -
7191763-7191879,7192375-7192494,7192568-7192666,
7192846-7192957,7193058-7193161,7193341-7193520,
7193611-7193880,7194364-7194660,7195283-7195477
Length = 497
Score = 31.1 bits (67), Expect = 1.7
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 44 YETEHDTIEVLSLGTGSKCIGATKMSPLGDLLNDSHAEVFARRGFIHYLIQNIEKATNNL 103
YETE D + LS TG IG K + + + D +A + I+ + NI++A+
Sbjct: 418 YETETDK-KALS-ETGGIPIGIGKNAHIRKAIIDKNARIGENVKIIN--VDNIQEASRET 473
Query: 104 DSIFIKTDSKLKLKDSI 120
D FIK+ +KD++
Sbjct: 474 DGYFIKSGIVTVIKDAL 490
>04_03_0390 + 15311748-15311753,15312172-15312438
Length = 90
Score = 31.1 bits (67), Expect = 1.7
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 365 ESIENIPYNKMKIKSKQYRDRWENLKENFFRIWTVKAD 402
E + N+ +K+++K K +D W LKE+ WT+K++
Sbjct: 13 ELVTNVAISKVEVKEKGGKD-WVALKESSSNTWTLKSE 49
>04_03_0334 - 14578017-14578370
Length = 117
Score = 31.1 bits (67), Expect = 1.7
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 365 ESIENIPYNKMKIKSKQYRDRWENLKENFFRIWTVKAD 402
E + NI ++++IK K +D W LKE+ WT+K++
Sbjct: 40 ELVTNIAISEVEIKEKGGKD-WVALKESSSNTWTIKSE 76
>06_03_1017 - 26923329-26923685
Length = 118
Score = 30.7 bits (66), Expect = 2.2
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 365 ESIENIPYNKMKIKSKQYRDRWENLKENFFRIWTVKAD 402
E I N+ ++++IK K D W LKE+ W +K+D
Sbjct: 40 ELITNVAISEVEIKEKGGSD-WRGLKESSANTWKIKSD 76
>04_03_0393 + 15335298-15335651
Length = 117
Score = 30.7 bits (66), Expect = 2.2
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 365 ESIENIPYNKMKIKSKQYRDRWENLKENFFRIWTVKAD 402
E + N+ ++++IK K +D W LKE+ WT+K++
Sbjct: 40 ELVTNVAISEVEIKEKGGKD-WVALKESSSNTWTIKSE 76
>06_03_0976 - 26475660-26476013
Length = 117
Score = 29.9 bits (64), Expect = 3.9
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 365 ESIENIPYNKMKIKSKQYRDRWENLKENFFRIWTVKA 401
E I N+ ++++IK K D W LKE+ WT+K+
Sbjct: 40 ELITNVAISEVEIKEKGASD-WTALKESSSNTWTIKS 75
>04_03_0335 - 14586917-14587270
Length = 117
Score = 29.9 bits (64), Expect = 3.9
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 365 ESIENIPYNKMKIKSKQYRDRWENLKENFFRIWTVKAD 402
E + N+ +++++K K +D W LKE+ WT+K++
Sbjct: 40 ELVTNVAISEVEVKEKGGKD-WVGLKESGSNTWTLKSE 76
>04_03_0337 - 14602158-14602511
Length = 117
Score = 29.5 bits (63), Expect = 5.1
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 365 ESIENIPYNKMKIKSKQYRDRWENLKENFFRIWTVKAD 402
E + N+ +++++K K +D W LKE+ WT+K++
Sbjct: 40 ELVTNVAISEVEVKEKGGKD-WVALKESSSNTWTLKSE 76
>05_07_0037 - 27229351-27230037,27230305-27230330,27230536-27231961
Length = 712
Score = 28.7 bits (61), Expect = 9.0
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 160 ESNCVHDTKRLKLSDIHRTGAKCLSNAE-QDLKIPGKDYHVLG---QVRTK-PGRGDRTL 214
E C KRLK S+ + T K S ++ Q + PG H RT PG+
Sbjct: 286 EPTCRSREKRLKSSENNDTNCKIGSCSQNQKSRAPGHHKHKGSAGVMFRTSVPGKEFEAA 345
Query: 215 SVSCSDKI 222
++CSDKI
Sbjct: 346 EINCSDKI 353
>03_05_1111 -
30479793-30479823,30479887-30479978,30480261-30480410,
30482229-30482354,30482563-30482628,30483134-30483214,
30483310-30483422,30483553-30483721,30484253-30484330,
30485489-30485752,30486239-30486379,30486548-30486759,
30486819-30486940,30487281-30487398,30487925-30487997
Length = 611
Score = 28.7 bits (61), Expect = 9.0
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 131 CGDASIIPKNGEEIEEHFGDLIKVKRKTDESNCVHDTKRLKLSDIH 176
CGD +++P + I E GD++ + + + NC + ++LS+++
Sbjct: 201 CGDPAVVPLI-QRILEPTGDVVTIIFQVNSRNCFFSIEFVELSNVY 245
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.137 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,150,166
Number of Sequences: 37544
Number of extensions: 512168
Number of successful extensions: 1070
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1067
Number of HSP's gapped (non-prelim): 15
length of query: 411
length of database: 14,793,348
effective HSP length: 84
effective length of query: 327
effective length of database: 11,639,652
effective search space: 3806166204
effective search space used: 3806166204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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