GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002445-TA|BGIBMGA002445-PA|IPR002466|Adenosine
deaminase/editase
         (411 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49242| Best HMM Match : No HMM Matches (HMM E-Value=.)             107   2e-23
SB_21392| Best HMM Match : A_deamin (HMM E-Value=0.025)               107   2e-23
SB_33142| Best HMM Match : No HMM Matches (HMM E-Value=.)              98   1e-20
SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)                    97   2e-20
SB_3066| Best HMM Match : dsrm (HMM E-Value=2.2e-32)                   68   1e-11
SB_54656| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   2e-09
SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.74 
SB_11015| Best HMM Match : 7tm_2 (HMM E-Value=0.00048)                 31   2.3  
SB_10037| Best HMM Match : 7tm_2 (HMM E-Value=0.0027)                  31   2.3  
SB_53418| Best HMM Match : zf-CCHC (HMM E-Value=8.2)                   30   3.0  
SB_23878| Best HMM Match : Big_2 (HMM E-Value=0.65)                    30   3.9  
SB_6255| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.9  
SB_43872| Best HMM Match : DUF229 (HMM E-Value=0)                      29   9.1  
SB_46807| Best HMM Match : DUF827 (HMM E-Value=0.28)                   29   9.1  

>SB_49242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score =  107 bits (256), Expect = 2e-23
 Identities = 55/114 (48%), Positives = 71/114 (62%), Gaps = 2/114 (1%)

Query: 158 TDESNCVHDTKRLKLSDIHRTGAKCLSNAEQDLKIPGKDYHVLGQVRTKPGRGDRTLSVS 217
           T E++C        L+DIHRTGAKC+    QD  + G +YHV G +RTKPGRGD TLS+S
Sbjct: 243 TTENSCFATITSGNLNDIHRTGAKCVPGEPQDPLLAGVNYHVTGILRTKPGRGDPTLSMS 302

Query: 218 CSDKIARWVHLGIHGALLD-LICEPVYIKHFIFGASVPYCEESLNRAILKRSNE 270
           CSDKI +W  LGI GALL   +  PVY+   I G   PY   ++ RA+  R+ +
Sbjct: 303 CSDKILKWNILGIQGALLSHFLAGPVYLSSIIVG-KCPYDVVAMERALYGRAGD 355



 Score =  100 bits (240), Expect = 2e-21
 Identities = 46/96 (47%), Positives = 64/96 (66%), Gaps = 2/96 (2%)

Query: 50  TIEVLSLGTGSKCIGATKMSPLGDLLNDSHAEVFARRGFIHYLIQNIEKATNNLDSIF-I 108
           T  ++SLGTGSKCIG  K+ P G +LNDSHAE+ ARRGF+ Y+   +++       IF  
Sbjct: 59  TYNIISLGTGSKCIGQNKLDPKGGVLNDSHAEIIARRGFVRYVYNQVKECYGEGSGIFTC 118

Query: 109 KTDSKL-KLKDSIEFIFYSSQLPCGDASIIPKNGEE 143
            +D+ L KLK+ + F  ++S  PCGDASI PK+ +E
Sbjct: 119 DSDTNLCKLKEDVTFHLFTSHTPCGDASIFPKSNDE 154


>SB_21392| Best HMM Match : A_deamin (HMM E-Value=0.025)
          Length = 140

 Score =  107 bits (256), Expect = 2e-23
 Identities = 55/114 (48%), Positives = 71/114 (62%), Gaps = 2/114 (1%)

Query: 158 TDESNCVHDTKRLKLSDIHRTGAKCLSNAEQDLKIPGKDYHVLGQVRTKPGRGDRTLSVS 217
           T E++C        L+DIHRTGAKC+    QD  + G +YHV G +RTKPGRGD TLS+S
Sbjct: 16  TTENSCFATITSGNLNDIHRTGAKCVPGEPQDPLLAGVNYHVTGILRTKPGRGDPTLSMS 75

Query: 218 CSDKIARWVHLGIHGALLD-LICEPVYIKHFIFGASVPYCEESLNRAILKRSNE 270
           CSDKI +W  LGI GALL   +  PVY+   I G   PY   ++ RA+  R+ +
Sbjct: 76  CSDKILKWNILGIQGALLSHFLAGPVYLSSIIVG-KCPYDVVAMERALYGRAGD 128


>SB_33142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 98.3 bits (234), Expect = 1e-20
 Identities = 97/374 (25%), Positives = 167/374 (44%), Gaps = 47/374 (12%)

Query: 35  WTVLSCIVKYETEHDTIEVLSLGTGSKCIGATKMSPLGDLLNDSHAEVFARRGFIHYLIQ 94
           + VL+  +  ++ +    V+S+GTG+KCIG  ++   G ++ DSHAEV ARRG + +L+ 
Sbjct: 195 YKVLAAFIMQDSSNPKGTVVSIGTGNKCIGGDQLRLEGTVVFDSHAEVIARRGLVRFLLS 254

Query: 95  NIE---KATNNLDSIFIK--TDSKLKLKDSIEFIFYSSQLPCGDASIIPKNGEEIEEHFG 149
            +    +  +   SIF+      ++KL++ ++F  Y S  PCGDAS+   +     E   
Sbjct: 255 QLNLLFEKPSESKSIFLPKIKGQQIKLREDVKFSLYISTAPCGDASVFVSDTASGSEGAD 314

Query: 150 DLIKVKRKTDESNCVHDTKRLKLSDIHRTGAKCLSNAEQDLKIPGKDYHVLGQVRTKPGR 209
            L+   ++       H   R K+        K       D   P      +  +R    R
Sbjct: 315 QLMFGSKQ-------HGLLRTKVE-------KGEGTIPLD---PDDSIQTIDGIR----R 353

Query: 210 GDRTLSVSCSDKIARWVHLGIHGALLDLICEPVYIKHFIFG--ASVPYCEESLNRAILKR 267
           G R  + SCSDK+A+W  LG+ GALL  + EP+Y+   + G      +   +++  I + 
Sbjct: 354 GQRLRTASCSDKLAKWNVLGLQGALLSNLIEPIYLNSLVVGNLFEASHLTRAVSARIERE 413

Query: 268 SNEFNNTRAPKFYQSFITFSDIKSEGKYRP--APGSIVWINLT-NPILEVAVQGRKLGLT 324
           + +  ++R P  Y+  +    I+  G+  P  +P  +   + T N  L   +   K    
Sbjct: 414 AVKPLSSRLPSPYR--VNLPKIQC-GRLAPVDSPRDVETKSKTKNLTLNWCLGDEKRAEV 470

Query: 325 KK---GKSISPDASLIISKYNIYKIFLKLLNRNKELKVSIFGDESIENIPYNKMKIKSKQ 381
                G+  +      +SK  IY  FL++  +N E K      + +E   Y K K ++  
Sbjct: 471 LDACLGRDPNNRVPSRLSKMAIYANFLEVAKKNSEYK------KVVEAKSYRKAKDQASD 524

Query: 382 YRDRWENLKENFFR 395
           Y     N K  FF+
Sbjct: 525 YL----NAKNTFFQ 534


>SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)
          Length = 1243

 Score = 97.5 bits (232), Expect = 2e-20
 Identities = 67/218 (30%), Positives = 105/218 (48%), Gaps = 22/218 (10%)

Query: 37   VLSCIVKYETEHDTIEVLSLGTGSKCIGATKMSPLGDLLNDSHAEVFARRGFIHYLIQNI 96
            V++CI+   +  D+  V+SLG G++C+   ++S  G ++NDSHAE+ ARR  + +    +
Sbjct: 889  VVACIIMKASLEDSGRVVSLGAGNRCVTGQRLSMEGKVVNDSHAEIIARRSLLRFFYAQL 948

Query: 97   EKATNNLDSIFIKTDS--KLKLKDSIEFIFYSSQLPCGDASII-PKNGEEIEEHFGDLIK 153
                +   SIF K ++  +L ++  + F  Y S  PCGD ++  P+ G            
Sbjct: 949  HAHFDGQKSIFEKRNNSRRLAVRQGVSFHLYISTAPCGDGALFTPREG------------ 996

Query: 154  VKRKTDESNCVHDTK-RLKLSDIHRTGAKCLSNAEQDLKIPGKDYHVLGQVRTKPGRGDR 212
            +     ES   H      KL  I RT    + + E  + +   D     Q      +G R
Sbjct: 997  LNTDLSESKMEHKPAFTSKLQGILRTK---IEDGEGTIPVDPSDG---PQTWDGLVQGGR 1050

Query: 213  TLSVSCSDKIARWVHLGIHGALLDLICEPVYIKHFIFG 250
              ++SCSDKI RW  LG+ GALL    EPVY++    G
Sbjct: 1051 LRTMSCSDKICRWNALGLQGALLSHFIEPVYLESLTLG 1088


>SB_3066| Best HMM Match : dsrm (HMM E-Value=2.2e-32)
          Length = 429

 Score = 68.1 bits (159), Expect = 1e-11
 Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 6/102 (5%)

Query: 52  EVLSLGTGSKCIGATKMSPLGDLLNDSHAEVFARRGFIHYLIQNIEKAT--NNLDSIF-I 108
           +++S+GTG+K I    +S  G  +ND H E+ ARRG   +L   +E     +   SIF +
Sbjct: 310 DMISIGTGTKFISGEYISDKGYAVNDCHGEIIARRGLRKFLYNQLELCVQGDQNSSIFEL 369

Query: 109 KTDSKLKLKDSIEFIFYSSQLPCGDASII-PKNG--EEIEEH 147
           K      LKD +EF  Y S  PCGDA +  P  G  EEI+ H
Sbjct: 370 KPSGLYGLKDQVEFHLYISTSPCGDARVFSPHEGDPEEIDRH 411


>SB_54656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 4/74 (5%)

Query: 18 LKTYEQLPKKGKP--ADDEWTVLSCIVKYETEHDTIEVLSLGTGSKCIGATKMSPLGDLL 75
          L  Y +LP+KGKP   + EW+VL+ +     +H    V  L TG+KC+G  ++   G L+
Sbjct: 20 LDRYNRLPRKGKPNPRELEWSVLAGVHLARPDHQ--HVACLATGTKCLGHERLDKEGGLV 77

Query: 76 NDSHAEVFARRGFI 89
           D HAEV ARR FI
Sbjct: 78 VDQHAEVLARRAFI 91


>SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 32.3 bits (70), Expect = 0.74
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 354 NKELKVSIFGDESIENIPYNKMKIKSKQYRDRWENLKENFFRIWTVK 400
           +KE +   +GDE  E+  Y + K K ++Y D+  N+K    +   +K
Sbjct: 16  DKEYEYEKYGDEEYEDKKYEEEKYKEEEYEDKDWNMKSKNMKTKNIK 62


>SB_11015| Best HMM Match : 7tm_2 (HMM E-Value=0.00048)
          Length = 283

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 17/62 (27%), Positives = 27/62 (43%)

Query: 76  NDSHAEVFARRGFIHYLIQNIEKATNNLDSIFIKTDSKLKLKDSIEFIFYSSQLPCGDAS 135
           N +++  F    F+H+   N    T N   I I  +S LKL D    +  +S    GD  
Sbjct: 50  NSNNSSAFHTTSFVHHRHDNCTHVTYNKTDITIYGNSTLKLNDLGVLLSNASYFVSGDVI 109

Query: 136 II 137
           ++
Sbjct: 110 VV 111


>SB_10037| Best HMM Match : 7tm_2 (HMM E-Value=0.0027)
          Length = 267

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 76  NDSHAEVFARRGFIHYLIQNIEKATNNLDSIFIKTDSKLKLKDSIEFIFYSSQLPCGDAS 135
           N +++  F    F+H+   N    T N  +I I  +S LKL D    +  +S    GD  
Sbjct: 50  NSNNSSAFHTPSFVHHRHDNCTHVTYNKTNITIYGNSTLKLNDLGVLLSNASYFVSGDVI 109

Query: 136 II 137
           ++
Sbjct: 110 VV 111


>SB_53418| Best HMM Match : zf-CCHC (HMM E-Value=8.2)
          Length = 196

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 117 KDSIEFIFYSSQLPCGDASIIPKNGEEIEEHFGDLIKVKRKTDESNCV 164
           KDSI+F+   +  PCG+ S  P+ G ++   F D  K  R  DES+ V
Sbjct: 14  KDSIKFLHSIACRPCGEDSQCPE-GRDLAVRFVD--KCARHGDESSIV 58


>SB_23878| Best HMM Match : Big_2 (HMM E-Value=0.65)
          Length = 1060

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 286 FSDIKSEGKYRPAPGSIVWINLTNPILEVAVQGRKLGLTKKGKSISPDASLIISKYNIYK 345
           F  I+ E  Y  APGS + + L    L + V    L +T + KSI   AS+ I  YN  K
Sbjct: 500 FQVIEDEADYEVAPGSCMSVRL----LALRVGFTTLIVTYQYKSIVLKASITIGSYNPLK 555

Query: 346 I 346
           +
Sbjct: 556 V 556


>SB_6255| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 368 ENIPYNKMKIKS-KQYRDRWENLKENFFRIWTVKADMW 404
           E++ Y +MKIKS      RWE     F+RIWT     W
Sbjct: 419 ESVKYVEMKIKSFPTATKRWELTFCPFYRIWTHCTVTW 456


>SB_43872| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 806

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 14/66 (21%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 310 PILEVAV-QGRKLGLTKKGKSISPDASLIISKYNIYKIFLKLLNRNKELKVSIFGDESIE 368
           P L V + +  K  + +  +++  + ++IIS Y+++  FL L++       + +G   + 
Sbjct: 439 PFLSVYIPEWFKKKIPRLAENLQRNTNVIISPYDLHATFLDLMDFPSNTTSNTYGTSLLR 498

Query: 369 NIPYNK 374
            +P N+
Sbjct: 499 RLPLNR 504


>SB_46807| Best HMM Match : DUF827 (HMM E-Value=0.28)
          Length = 558

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 29/152 (19%), Positives = 62/152 (40%), Gaps = 7/152 (4%)

Query: 74  LLNDSHAEVFARRGFIHYLIQNIEKATNNLDSIFIKTDSKLKLKDSIEFIFYSSQLPCGD 133
           L ND  + V   R  + +L+Q++ K  N+   I  +  +  ++ D  E  F +      D
Sbjct: 29  LSNDDMSSVALSRHRLQWLVQHLTKENNSFKGITEENKNLKQMLDCTERNFEAELRQIND 88

Query: 134 ASIIPKNGEEIEEHFGDLIK-----VKRKTDESNCVHDTKRLKLSDIHRTGAKCLSNAEQ 188
           A+    + E +E    D ++     V R  + +  + D  +L    + R   + ++   Q
Sbjct: 89  AA--KADHEVMENALKDAMRQHDETVARLQETTKTLDDLSQLVTEQLKRKDQEVIAVKRQ 146

Query: 189 DLKIPGKDYHVLGQVRTKPGRGDRTLSVSCSD 220
           +  +  ++  +   +R   G  D  L V  ++
Sbjct: 147 NEYLKEQNISLKAAIREADGTMDADLVVKLTE 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.137    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,440,957
Number of Sequences: 59808
Number of extensions: 619123
Number of successful extensions: 1287
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1265
Number of HSP's gapped (non-prelim): 22
length of query: 411
length of database: 16,821,457
effective HSP length: 84
effective length of query: 327
effective length of database: 11,797,585
effective search space: 3857810295
effective search space used: 3857810295
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)