Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002444-TA|BGIBMGA002444-PA|IPR001958|Tetracycline
resistance protein, IPR011701|Major facilitator superfamily MFS_1,
IPR007114|Major facilitator superfamily
(398 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0214 + 13141213-13143741 40 0.005
09_04_0291 + 16433097-16433942,16434708-16434851,16435226-164353... 31 1.6
03_02_0149 + 5933134-5933207,5935039-5935267,5935370-5935468,593... 31 2.1
07_03_1583 - 27898375-27898436,27898455-27898539,27898621-278987... 30 2.8
05_01_0486 - 4047055-4049013 30 2.8
02_05_1082 - 33976038-33978035 30 3.7
10_08_0919 + 21564245-21565699,21566876-21567022,21567170-215672... 29 8.6
03_01_0101 + 821123-821273,821351-821495,821582-821750,823146-82... 29 8.6
>06_02_0214 + 13141213-13143741
Length = 842
Score = 39.5 bits (88), Expect = 0.005
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 266 YFIGYINSFYKK-DVDYSLRSLHVFLLLSISLTGLIVSINVYNYV-IWLIPLAMGNAVSR 323
YF Y+ SFY + D+D S++S++ L +I L ++ S + N + I + P + NA+
Sbjct: 325 YFNAYVGSFYAQHDIDLSIQSMNQ-LATAIYLDVVLSSNDASNKLSISIGPSTLNNALPD 383
Query: 324 LVTLEM-VLKRSDGDHRGTLIGASNSVRSLSGVVAPMVAGFTGQFLGVSYVI 374
+ + V+K S G +G+S S ++L GV+ V G G + V ++
Sbjct: 384 GILNGLEVMKMSSGSGSAFTVGSSGSNKNL-GVIIGSVLGAVGILIIVLVIV 434
>09_04_0291 +
16433097-16433942,16434708-16434851,16435226-16435390,
16435551-16435562
Length = 388
Score = 31.1 bits (67), Expect = 1.6
Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 296 LTGLIVSINVYNYVIWLIPLAMGNAVSRLVTLEMVLKRS----DGDHRGTLIGASNSVRS 351
L+ ++ S+ +Y + +PL+ + L + LKR D +H ++ N +R+
Sbjct: 261 LSAMVTSLETLDYYYYALPLSPTKLLKGLPSSYKNLKRLKVHLDFNHAPPILSTLNFLRT 320
Query: 352 LSGVVAPMVAGFTGQFLGVSYV-----IYASLAPTVLGLVMSYHYRTKRKVD 398
+ ++ FT S +Y +L P++L L MSY ++D
Sbjct: 321 APNLTQLVIQDFTDDSYAQSPYPLAAELYGNLCPSLLFLQMSYVTSQNNEMD 372
>03_02_0149 +
5933134-5933207,5935039-5935267,5935370-5935468,
5935582-5935616,5935694-5935769,5936552-5936662,
5937001-5937087,5937302-5937395,5937489-5937606,
5938047-5938542,5939263-5939298,5940047-5940578,
5940668-5940792
Length = 703
Score = 30.7 bits (66), Expect = 2.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 348 SVRSLSGVVAPMVAGFTGQFLGVSYVIYASLAPTVL 383
++ +LSGV P AG G + V Y + LAP+VL
Sbjct: 54 NIGALSGVSIPGAAGPLGNIVAVPYTLPVHLAPSVL 89
>07_03_1583 -
27898375-27898436,27898455-27898539,27898621-27898768,
27899009-27899028,27899135-27899236,27899743-27899812,
27899956-27900012,27902324-27902484,27902742-27902761,
27902997-27903069,27903077-27903169,27903456-27903496,
27903597-27903858
Length = 397
Score = 30.3 bits (65), Expect = 2.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 340 GTLIGASNSVRSLSGVVAPMVAGFTGQFLGVSYV 373
GT+I +RS +G V P+V F+ +G SY+
Sbjct: 332 GTIIDPLEQLRSSNGTVGPIVEAFSFLAIGTSYI 365
>05_01_0486 - 4047055-4049013
Length = 652
Score = 30.3 bits (65), Expect = 2.8
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 13/76 (17%)
Query: 203 FVVLYSINWSKYWDIFLYKALVGFAMGVYYSNYALYLKTTYDLSPKYVGYVISFQGVMGS 262
+V LYSIN+ +F ++L G Y Y+L + LS +G+++SF
Sbjct: 590 YVFLYSINYL----VFDLRSLSGPVSATLYLGYSLIMALAIMLSTGAIGFLLSF------ 639
Query: 263 ISSYFIGYINSFYKKD 278
YF+ Y+ S K D
Sbjct: 640 ---YFVHYLFSSVKID 652
>02_05_1082 - 33976038-33978035
Length = 665
Score = 29.9 bits (64), Expect = 3.7
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 203 FVVLYSINWSKYWDIFLYKALVGFAMGVYYSNYALYLKTTYDLSPKYVGYVISF 256
++ LYSIN+ +F K+L G Y Y+L++ L+ VG++ SF
Sbjct: 603 YIFLYSINYL----VFDLKSLSGPVSATLYLGYSLFMVIAIMLATGTVGFISSF 652
>10_08_0919 +
21564245-21565699,21566876-21567022,21567170-21567286,
21567580-21568176
Length = 771
Score = 28.7 bits (61), Expect = 8.6
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 246 SPKYVGYVISFQGVMGSISSYFIGYINSFYKKDVDYSLRSLHVFLLL---SISLTGLIVS 302
SP++ +V+S S+ +F+G+ + F DV L+ + L + S L GLI S
Sbjct: 443 SPEWENFVLSNYLFYSSLVVHFLGFAHKFIHSDVSSVLQMVSKVLEVLASSTELLGLIYS 502
Query: 303 IN 304
++
Sbjct: 503 VD 504
>03_01_0101 +
821123-821273,821351-821495,821582-821750,823146-823416,
823509-823771,823852-824067,824154-824268,824367-824410
Length = 457
Score = 28.7 bits (61), Expect = 8.6
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 196 FNSFKQSFVVLYSINWSKYW----DIFLYKALVGFAMGVYYSNYALYLKTTYDLSPKYVG 251
FNSFK ++V++YS+ S W ++ + GF G + ++ L VG
Sbjct: 35 FNSFKNNYVLVYSLMMSGDWLQGPYVYYLYSQYGFDKGDIGRLFIAGFGSSM-LFGTIVG 93
Query: 252 YVISFQGVMGSISSYFIGYINS-FYKKDVDYSLRSLHVFLLLSISLTGLIVSINVYNYVI 310
+ QG + +Y I YI S K +Y + L++ L G+ S+ +
Sbjct: 94 SLADKQGRKRACITYCISYILSCITKHSPEYKI------LMIGRVLGGIATSLLFSAFES 147
Query: 311 WLI 313
WL+
Sbjct: 148 WLV 150
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.325 0.142 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,619,516
Number of Sequences: 37544
Number of extensions: 357489
Number of successful extensions: 980
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 974
Number of HSP's gapped (non-prelim): 11
length of query: 398
length of database: 14,793,348
effective HSP length: 84
effective length of query: 314
effective length of database: 11,639,652
effective search space: 3654850728
effective search space used: 3654850728
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)
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