Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002444-TA|BGIBMGA002444-PA|IPR001958|Tetracycline
resistance protein, IPR011701|Major facilitator superfamily MFS_1,
IPR007114|Major facilitator superfamily
(398 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56759| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 1e-24
SB_19706| Best HMM Match : TrbL (HMM E-Value=1.1) 48 1e-05
SB_23058| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.058
SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.94
SB_58676| Best HMM Match : FUN14 (HMM E-Value=0.16) 30 2.9
SB_20867| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_2636| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_48359| Best HMM Match : DUF1253 (HMM E-Value=5.6e-09) 30 2.9
SB_22345| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.8
SB_20616| Best HMM Match : Rhomboid (HMM E-Value=5) 30 3.8
SB_11388| Best HMM Match : MFS_1 (HMM E-Value=0.0022) 30 3.8
SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_15046| Best HMM Match : IlvB_leader (HMM E-Value=4.4) 29 6.6
SB_4024| Best HMM Match : TatD_DNase (HMM E-Value=0) 29 8.7
>SB_56759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 421
Score = 111 bits (266), Expect = 1e-24
Identities = 56/178 (31%), Positives = 108/178 (60%), Gaps = 3/178 (1%)
Query: 210 NWSKYWDIFLYKALVGFAMGVYYSNYALYLKTTYDLSPKYVGYVISFQGVMGSISSYFIG 269
++S D+ + + L+GF+M ++ SN++ L+ Y+ +PK GY++SF G++G +S YF+G
Sbjct: 230 SFSNVLDLLIVRFLMGFSMIIFRSNFSTVLEFRYNTTPKTNGYIMSFNGIVGGLSGYFVG 289
Query: 270 YINSFYKKDVDYSLRSLHVFLLLSISLTGLIVSINVYNYVIWLIPLAMGNAVSRLVTLEM 329
+ +FY D +L LH +L++S+ + S ++ V+++ PLA +AVSR+ + +
Sbjct: 290 NLLTFYNNDDAKAL--LHFSSILAMSIFCVTFSPELWVLVVFIAPLAFSSAVSRVCSTNL 347
Query: 330 VLKRSDGDHRGTLIGASNSVRSLSGVVAPMVAGFTGQFLGVSYVIYASLAPTVLGLVM 387
LKR D +G L+G NS+ S + +++P + G Q L V S++ + +G+++
Sbjct: 348 TLKRGRADEKGLLLGVGNSLMSFARMLSPTLGGL-AQELSVYAPGMLSVSVSAVGILL 404
Score = 72.5 bits (170), Expect = 5e-13
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 32 GSIYAGFQLGSGPLIGSLSDLKGRRXXXXXXXXXCSVAYTVLGLTXXXXXXXXXXXXXXX 91
GS+Y Q S PL+G SD+ GR+ AY + GL+
Sbjct: 23 GSVYGAIQFFSNPLVGKFSDVAGRKKVLLVSLLGTGAAYLLHGLSVSLIMLALTRIPIGL 82
Query: 92 XKQTQMLAKALVPDYENNEQKQAEIYGKMAAISGVGITLGPMIGGHI-MEDNPNGAFMFI 150
KQ+Q L KA + D Q+ ++GK A S +G +GP+IGGH+ M DN F +
Sbjct: 83 FKQSQSLCKACLADITAPAQR-ISVFGKFNAFSSLGFVVGPLIGGHLAMTDN---GFFRV 138
Query: 151 AFIVGICFI 159
+ GI F+
Sbjct: 139 FLLEGILFV 147
>SB_19706| Best HMM Match : TrbL (HMM E-Value=1.1)
Length = 300
Score = 48.4 bits (110), Expect = 1e-05
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 10/152 (6%)
Query: 221 KALVGFAMGVYYSNYALYLKTTYDLSPKYVGYVISFQGVMGSI-SSYFIGYINSFYKKDV 279
K + G++ S +A+ + L +Y G+V+S+ G + + +GY++ + D
Sbjct: 125 KLVSAVPFGIFQSMFAIVSMEYFKLDAQYNGFVLSYAGTLSIVVQGIGVGYLSHRFN-DT 183
Query: 280 DYSLRSLHVFLLLSISLTGLIVSINVYNYVIWLIPLAMGNAVSRLVTLEMVLKRSDGDHR 339
D S+ ++ + + + +Y + LIPL G + +VT + K
Sbjct: 184 DLLKWSIGT---IAFAYACMFMVTTIYQFCAVLIPLVAGGTILTIVTTSSMTKAVPIKDT 240
Query: 340 GTLIG---ASNSVRSLSGVVAPMVAGFTGQFL 368
GT++G A NS+RS V P V F G FL
Sbjct: 241 GTVLGLSMACNSLRS-KKAVKPNVHQF-GHFL 270
>SB_23058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 554
Score = 35.9 bits (79), Expect = 0.058
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 6 AVGLIIPLVPGHVRKMGANHIYVGLLGSIYAGFQLGSGPLIGSLSDLKGRRXXXXXXXXX 65
AVG PL+ + +++G N G+L + S P++GSL+D +R
Sbjct: 48 AVGSFFPLLGVYFKQLGMNPYLSGILVGCRPMVEFFSAPILGSLADRLDKRKVLMIFSLM 107
Query: 66 CSVAYT 71
C V++T
Sbjct: 108 CWVSFT 113
>SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 31.9 bits (69), Expect = 0.94
Identities = 48/187 (25%), Positives = 82/187 (43%), Gaps = 15/187 (8%)
Query: 221 KALVGFAMGVYYSNYALYLKTTYDLSPKYVGYVISFQGVM--GSIS-SYFIGYINSFYKK 277
KA V + G++ +A+Y+ TY + + + QG + G +S S +G I Y +
Sbjct: 182 KAFVLWIFGLFLVFFAVYIPFTYLVQVAQLKGIPPSQGALLVGLMSMSGTVGKI--VYGR 239
Query: 278 DVDYSLRSLHVFLLLSISLTGLIVSINVY----NYVIWLI-PLAMGNAVSRLVTLEMVLK 332
D LRS++ LL SL + + V+ +Y ++L LA G L ++
Sbjct: 240 IAD--LRSMNRLYLLQASLLAISIGAIVFPLSRSYPVFLAYALAHGLLDGGAAVLLGLIT 297
Query: 333 RS--DGDHRGTLIGASNSVRSLSGVVAPMVAGFTGQFLGVSYVIYASLAPTVLGL-VMSY 389
R + +G+ V ++ V P VAG + G +Y + A T+ G +MS
Sbjct: 298 RDIVGKELMSAAVGSMYGVAAIPLSVGPPVAGLMFESFGSHDAVYYAAALTLAGASIMSL 357
Query: 390 HYRTKRK 396
R R+
Sbjct: 358 IPRVSRE 364
>SB_58676| Best HMM Match : FUN14 (HMM E-Value=0.16)
Length = 217
Score = 30.3 bits (65), Expect = 2.9
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 296 LTGLIVSINVYNYVIWLIP-LAMGNAVSRLVTLEMVLKRSDGDHR--GTLIGASNSVRSL 352
LTG+++ Y +V+ ++ +A+ A + + + D R G ++G N+V +
Sbjct: 4 LTGVLIVAAGYAHVVAVVVFVALAGASTSISYAGYTVNMLDIAPRCAGVIMGICNTVGTT 63
Query: 353 SGVVAPMVAGFTGQ 366
+G ++PM+ GF Q
Sbjct: 64 AGFISPMLVGFLTQ 77
>SB_20867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 30.3 bits (65), Expect = 2.9
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 217 IFLYKALVGF---AMGVYYSNYALYLKTTYDLSPKYVGYVISFQGVMGSISSYFIGYINS 273
+ +YK F A+G + LYLK + L VG ++ + IS+ +G +
Sbjct: 56 LLIYKVFYFFYFAAIGSLQPYFGLYLKHSVQLPAYLVGIILGVRPFCLFISAPILGTLAD 115
Query: 274 FYKKDVDYSLRSLHVFLLLSISLTGLIVSI 303
Y+K ++++ + + S++++ LIV++
Sbjct: 116 KYRK-----VKAVLILAVFSLTVSSLIVTV 140
>SB_2636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 30.3 bits (65), Expect = 2.9
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 14/141 (9%)
Query: 242 TYDLSPKYVGYVISFQGVMGSISSYFIGYINSFYKKDV------DYSLRSLHVFLLLSIS 295
TY P + G+ GV+ S +S +G + S V Y LR+ +LL +++
Sbjct: 15 TYTAWPCHYGFG---PGVVLSSTSLVVGLLGSIGNLLVCFTVLRSYELRNTPHYLLFNLA 71
Query: 296 LTGLIVSINVYNYVIWLIPLAMGNAVSRLVTLE-MVLKRSDGDHRGTLIGASNSVRSLSG 354
+ L+VS+++ + W++ L G L + VL S TL+ S+ ++
Sbjct: 72 MADLMVSLSLPLFSAWMVGLIHGRCYGMLSHVRGFVLNTSVLASVSTLV--IISIERMAA 129
Query: 355 VVAPM--VAGFTGQFLGVSYV 373
V+ P+ + T + LG+ ++
Sbjct: 130 VMLPLRHLTILTARRLGIMHL 150
>SB_48359| Best HMM Match : DUF1253 (HMM E-Value=5.6e-09)
Length = 210
Score = 30.3 bits (65), Expect = 2.9
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 353 SGVVAPMVAGFTGQFLGVSYVIYASLAPTVLGLVMSYHYRT 393
SG V P T FLGVS+V+ + L + YH+RT
Sbjct: 7 SGYVVPSGKDVTSAFLGVSFVLLSRLVYLSFLKDLFYHHRT 47
>SB_22345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 29.9 bits (64), Expect = 3.8
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 291 LLSISLTGLIVSINVYNYVIWLIPLAMGNAVSRL-VTLEMVLKRSDGDHRG-TLIGASNS 348
+LS +T L+ + + ++ ++ +A G A VT+ ++ S RG + G +
Sbjct: 152 VLSGVVTILLTLASTFTFLA-VLAVAYGVADGAYKVTINILFINSVDLKRGPSAFGQAQM 210
Query: 349 VRSLSGVVAPMVAGFTGQFLG-VSYVIYASLAPTVLGLVMSY 389
V SLS V P +AG G S Y + A T+LG + +
Sbjct: 211 VTSLSSVAGPAIAGMIADRTGSYSLAFYVTGAVTLLGAAVFF 252
>SB_20616| Best HMM Match : Rhomboid (HMM E-Value=5)
Length = 359
Score = 29.9 bits (64), Expect = 3.8
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 6 AVGLIIPLVPGHVRKMGANHIYVGLLGSIYAGFQLGSGPLIGSLSDLKGRRXXXXXXXXX 65
A+G ++P + + R +G + +G+LG I L SGPL +S+ R
Sbjct: 29 ALGSLLPFLTLYYRSLGLSAWQIGVLGGIRPLIALLSGPLWCFISNQYNVRKLILVASLI 88
Query: 66 CSVAYTV 72
VA+T+
Sbjct: 89 SWVAFTL 95
>SB_11388| Best HMM Match : MFS_1 (HMM E-Value=0.0022)
Length = 720
Score = 29.9 bits (64), Expect = 3.8
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 6 AVGLIIPLVPGHVRKMGANHIYVGLLGSIYAGFQLGSGPLIGSLSD 51
A+G + P + G++R++G ++ + +L + L PL G L D
Sbjct: 57 AIGTVFPFLNGYIRQIGISNDQMQILSGVRPLIHLVFAPLWGVLGD 102
>SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1020
Score = 29.5 bits (63), Expect = 5.0
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 289 FLLLSISLTGLIVSINVYNYVIWLIPLAMGNAVSRLVTLEMVLKRSDGDHRGTLIGASNS 348
F ++ +L L++ Y+I P R +TLE +LK S DH G+ + + S
Sbjct: 810 FAMILSNLCLLVIMFGPKLYIILFRPDLNNARTFRKMTLEHILKSSSLDHGGSSLSMA-S 868
Query: 349 VRS 351
VRS
Sbjct: 869 VRS 871
>SB_15046| Best HMM Match : IlvB_leader (HMM E-Value=4.4)
Length = 123
Score = 29.1 bits (62), Expect = 6.6
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 218 FLYKALVGFAMGVYYSNYALYLKTTYDLSPKYVGYVISFQGVMGSISSY 266
+L L+ +G+ N A Y D++PKY G ++ V G+ +
Sbjct: 62 YLAVGLLTIGVGITGINAAGYAVNILDIAPKYAGVIMGVTNVFGAAPGF 110
>SB_4024| Best HMM Match : TatD_DNase (HMM E-Value=0)
Length = 236
Score = 28.7 bits (61), Expect = 8.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 275 YKKDVDYSLRSLHVFLLLSISLTGLIVSIN 304
Y VD++ + LH F L I LTG++ S N
Sbjct: 145 YTGSVDFAQKFLHQFSNLYIGLTGIVTSSN 174
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.325 0.142 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,716,336
Number of Sequences: 59808
Number of extensions: 380484
Number of successful extensions: 936
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 922
Number of HSP's gapped (non-prelim): 17
length of query: 398
length of database: 16,821,457
effective HSP length: 84
effective length of query: 314
effective length of database: 11,797,585
effective search space: 3704441690
effective search space used: 3704441690
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)
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